Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0044
         (495 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   4.6  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   6.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 391 EIGTNCNKILPADGAIPSHCTLAPILLSPK 302
           EI  N   I+   G    +  LAPI  SP+
Sbjct: 91  EINPNLKTIISIGGWNAGNAILAPIAASPE 120


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 156 RRRVSIWCKGYTRTLQKRTKKIRYL 230
           R+R  ++ K  T  L++R ++ RYL
Sbjct: 41  RKRRVLFSKAQTYELERRFRQQRYL 65


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 40  VYLRCWNA 17
           VY+ CWNA
Sbjct: 381 VYIPCWNA 388


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = +2

Query: 14   NSIPTAQIHHNGENLKGKRDRNRSPLRQKLVFYHQRLLNTKTENT 148
            +SIP   +  NG   K   + N    R  L    +  +  K+ N+
Sbjct: 1512 SSIPAKDVFENGHVNKAFEEDNYDHRRNSLQMQQRNNVTWKSSNS 1556


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = +2

Query: 14   NSIPTAQIHHNGENLKGKRDRNRSPLRQKLVFYHQRLLNTKTENT 148
            +SIP   +  NG   K   + N    R  L    +  +  K+ N+
Sbjct: 1512 SSIPAKDVFENGHVNKAFEEDNYDHRRNSLQMQQRNNVTWKSSNS 1556


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = +2

Query: 14   NSIPTAQIHHNGENLKGKRDRNRSPLRQKLVFYHQRLLNTKTENT 148
            +SIP   +  NG   K   + N    R  L    +  +  K+ N+
Sbjct: 1512 SSIPAKDVFENGHVNKAFEEDNYDHRRNSLQMQQRNNVTWKSSNS 1556


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = +2

Query: 14   NSIPTAQIHHNGENLKGKRDRNRSPLRQKLVFYHQRLLNTKTENT 148
            +SIP   +  NG   K   + N    R  L    +  +  K+ N+
Sbjct: 1512 SSIPAKDVFENGHVNKAFEEDNYDHRRNSLQMQQRNNVTWKSSNS 1556


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,070
Number of Sequences: 336
Number of extensions: 2692
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11630247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)