Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30019
         (523 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   3.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.8  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 434 SKSTGILIQYCRLFSTIYCAAYGKGSDRMV 345
           S  TGI +    + +T  C A+GK S +++
Sbjct: 127 SYMTGIWVWLINISATYICYAFGKFSCKVM 156


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 434 SKSTGILIQYCRLFSTIYCAAYGKGSDRMV 345
           S  TGI +    + +T  C A+GK S +++
Sbjct: 360 SYMTGIWVWLINISATYICYAFGKFSCKVM 389


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 434 SKSTGILIQYCRLFSTIYCAAYGKGSDRMV 345
           S  TGI +    + +T  C A+GK S +++
Sbjct: 360 SYMTGIWVWLINISATYICYAFGKFSCKVM 389


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,847
Number of Sequences: 336
Number of extensions: 2427
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)