Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00001
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    26   0.22 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.2  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 105 LPRCQRWRYPQWPWHLENYMSQPPTKLPRSPPSSKRGSLEPRP 233
           +P C  W   +        +  PPT  PR    S+R    PRP
Sbjct: 228 VPECADWYKGRLTDEQLKELENPPTPKPRPTKVSRRKPRPPRP 270


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 324 PSPQPGCSSSHNTSDTITNAQDTTVSSRSAL 232
           P PQ    S+ NTS + TN+     S  + L
Sbjct: 419 PQPQITSPSNTNTSTSSTNSNKPNSSDLNML 449


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,157
Number of Sequences: 336
Number of extensions: 3139
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)