Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_C05
(656 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.7
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.7
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.7
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 23 1.7
AM292382-1|CAL23194.2| 670|Tribolium castaneum gustatory recept... 23 2.9
DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase rever... 22 3.9
AY618898-1|AAU87291.1| 803|Tribolium castaneum receptor tyrosin... 22 5.1
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.7
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.7
AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH trans... 21 6.7
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 21 8.9
DQ855491-1|ABH88178.1| 144|Tribolium castaneum chemosensory pro... 21 8.9
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 23.4 bits (48), Expect = 1.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 385 LPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 281
LP V + + LL T FN FM+ V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 23.4 bits (48), Expect = 1.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 385 LPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 281
LP V + + LL T FN FM+ V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 23.4 bits (48), Expect = 1.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 385 LPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 281
LP V + + LL T FN FM+ V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 634 PIETTMPPINEGSTLAVSCTVS 569
P + INEG ++V CTVS
Sbjct: 607 PFDFGEDSINEGDGVSVQCTVS 628
>AM292382-1|CAL23194.2| 670|Tribolium castaneum gustatory receptor
candidate 61 protein.
Length = 670
Score = 22.6 bits (46), Expect = 2.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 343 FNASTFMLLFIVGLMMNSLSFASVLI 266
FN +L+F+V L NS F ++I
Sbjct: 75 FNTFAKLLIFVVSLSGNSAVFIMLII 100
>DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase reverse
transcriptase protein.
Length = 596
Score = 22.2 bits (45), Expect = 3.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 496 LQPNH*IKHRDKIW 537
L PN+ I+H+ K+W
Sbjct: 407 LPPNYEIRHKFKLW 420
>AY618898-1|AAU87291.1| 803|Tribolium castaneum receptor tyrosine
kinase Torso-likeprotein protein.
Length = 803
Score = 21.8 bits (44), Expect = 5.1
Identities = 15/72 (20%), Positives = 28/72 (38%)
Frame = +3
Query: 222 ALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLL 401
A IV + ++ KT +K +PT + + ++ + P +L+G +
Sbjct: 461 AFGIVRRAFLDLKEDNKTQVAVKMLKESPTSEEIRQFTQEINIMKSVRQHPYIVSLIGCV 520
Query: 402 AENGRLGKLEAV 437
E G L V
Sbjct: 521 TEGRAEGPLLVV 532
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 388 RLPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 281
++P + + L+ T FN FM+ V L + L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 388 RLPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 281
++P + + L+ T FN FM+ V L + L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298
>AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH
transcription factor protein.
Length = 193
Score = 21.4 bits (43), Expect = 6.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +3
Query: 156 VQVFGLEGRYASALFSAASKTKALDI 233
+Q L RY L+ S ALD+
Sbjct: 134 IQTLKLAARYIDFLYHVLSNENALDV 159
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 21.0 bits (42), Expect = 8.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 543 ALKKFLKGNETVQLTAKVDPSLIGGM 620
AL K K T LT + DP GG+
Sbjct: 97 ALPKLFKEWGTTALTFEEDPEPFGGV 122
>DQ855491-1|ABH88178.1| 144|Tribolium castaneum chemosensory
protein 5 protein.
Length = 144
Score = 21.0 bits (42), Expect = 8.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 567 NETVQLTAKVDPSLIGGMVVSIGDKY 644
NE QL AK DP I I D Y
Sbjct: 109 NEWNQLVAKYDPDGIYRKQYEIDDDY 134
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,904
Number of Sequences: 336
Number of extensions: 3583
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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