Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_A06
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    26   0.24 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.41 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   2.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.7  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    21   6.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.9  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 426 VLTVVMKNWEPLVSAPALAMERTPGPVCLRVKFSXSNLLP*MDFPPVPLWLVKSP 262
           VL + M  +EP    P++     PGP      F  +N LP    PP+PL  + +P
Sbjct: 143 VLNLTMPKYEP---NPSII---DPGPALPPAGFLCNNYLPLPQVPPLPLPPIFAP 191


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 294 ESPSTAISLXTR---ISPLSTLDLASSPWLMPV 383
           ESP  A  L  R   I  +ST+DL SS W +P+
Sbjct: 373 ESPPAADELLRRFHEIRYMSTIDLRSSYWQIPL 405


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 164 TCENFRALCTGEK 202
           T ++FR LCTG K
Sbjct: 408 TLDDFRGLCTGNK 420


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 426 VLTVVMKNWEPLVSAPALAMERTPGPVCLRVKFSXSNLLP*MDFPPVPL 280
           VL + M  +EP    P++     PGP      F  +N  P    PP+PL
Sbjct: 143 VLNLTMPKYEP---NPSII---DPGPALPPTGFLCNNYPPLPQVPPLPL 185


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -2

Query: 513 WLPKVSICLTTSMPSTTFPKTTCLPSXQEVL 421
           W+P + IC++   P    P  T + +   +L
Sbjct: 478 WMPVMRICVSAWNPKDCDPLITLIETWMPLL 508


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 248 FMLQGGDFTNHNGTGGKSIYG 310
           F + GGDF    G+G   +YG
Sbjct: 78  FWIHGGDFV--TGSGTSEMYG 96


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 165 VLGVTSLXSSITIFPSGASSTVTSKN 88
           VLG T+L     I P+G  +T+ S +
Sbjct: 349 VLGGTALPDISEIIPTGDDTTMDSND 374


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 165 VLGVTSLXSSITIFPSGASSTVTSKN 88
           VLG T+L     I P+G  +T+ S +
Sbjct: 349 VLGGTALPDISEIIPTGDDTTMDSND 374


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 165 VLGVTSLXSSITIFPSGASSTVTSKN 88
           VLG T+L     I P+G  +T+ S +
Sbjct: 349 VLGGTALPDISEIIPTGDDTTMDSND 374


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 165 VLGVTSLXSSITIFPSGASSTVTSKN 88
           VLG T+L     I P+G  +T+ S +
Sbjct: 349 VLGGTALPDISEIIPTGDDTTMDSND 374


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,325
Number of Sequences: 336
Number of extensions: 3627
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)