SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20030
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.8  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 256 HSWIFIYWALRK*FATCFI 200
           H+WI++ W L + + T  I
Sbjct: 463 HAWIWLLWLLSQTWITLHI 481


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 256 HSWIFIYWALRK*FATCFI 200
           H+WI++ W L + + T  I
Sbjct: 463 HAWIWLLWLLSQTWITLHI 481


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 256 HSWIFIYWALRK*FATCFI 200
           H+WI++ W L + + T  I
Sbjct: 463 HAWIWLLWLLSQTWITLHI 481


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 256 HSWIFIYWALRK*FATCFI 200
           H+WI++ W L + + T  I
Sbjct: 463 HAWIWLLWLLSQTWITLHI 481


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 225 ANNSPLVLSSNFMTNSFPFDTNLMRPVHCGSCKF 124
           A+ SPL+ SS+     FP D  +  P   G   F
Sbjct: 175 ASVSPLISSSSSPPGVFPVDAPMHSPPGDGILDF 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,241
Number of Sequences: 336
Number of extensions: 3220
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -