Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0029
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    25   0.49 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   6.0  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 110 TVNNVRSNGSGEEEIRWKRRVGARRYHLTSLYARRFATG 226
           TV+ V SN  G + IR+K+ +G +     +LYA + A G
Sbjct: 273 TVSQV-SNWFGNKRIRYKKNIG-KAQEEANLYAAKKAAG 309


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 279 FASIKMLLKIKHKKSNILQSKRLLCER 359
           F +I  L +  H K +I + KRL C +
Sbjct: 209 FVAITKLEQWNHSKVHIREDKRLTCPK 235


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 125 RSNGSGEEEIRWKRRVGARRYHLTSLYARRFATGGRTRENPTRSNKELETAL 280
           R++G+G   +   R   A++  + ++   + A GGR    P RS + L   L
Sbjct: 295 RADGAGGP-LHDHRPALAQQRRVAAVQVPQLAGGGRRGPGPARSRRHLPAHL 345


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 428 HRLAVDHAADKKHIKSLCSNIDTVE 502
           H L    + + + +K+ CS++D+V+
Sbjct: 260 HHLVNPQSLNHQEVKAECSDLDSVD 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,502
Number of Sequences: 336
Number of extensions: 2642
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)