Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0024
         (455 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   3.1  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    21   4.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   4.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   4.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   5.5  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    20   9.5  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    20   9.5  

>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 16  MGSYFNYYFYCYTLTRSWICKR 81
           MG+  N  F CYT+    +CKR
Sbjct: 69  MGTIVNA-FSCYTVLAPVLCKR 89


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
          protein protein.
          Length = 86

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 28 FNYYFYCYTLTR 63
          FNYY+Y  T  R
Sbjct: 62 FNYYYYAATYAR 73


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 368 GVSVDSCNHLKPSGP 412
           G S DSC+  K  GP
Sbjct: 165 GYSADSCDSKKKKGP 179


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory
          receptor candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 34 YYFYCYTLT 60
          YYFYC ++T
Sbjct: 57 YYFYCVSIT 65


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 279 YIPVSKVEPPLYYTVET*ISCFEVGDGIMLG*VWTPVT 392
           ++ VS +  P+Y+   + +S F  G+G ++   W  VT
Sbjct: 575 FLNVSSI--PIYFKWLSFLSWFRYGNGALMINQWENVT 610


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 279 YIPVSKVEPPLYYTVET*ISCFEVGDGIMLG*VWTPVT 392
           ++ VS +  P+Y+   + +S F  G+G ++   W  VT
Sbjct: 575 FLNVSSI--PIYFKWLSFLSWFRYGNGALMINQWENVT 610


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 61  RSWICKRGHHIPKDKAADVLIPRYSIKSVQNPTD 162
           R W C+ G+   +   A ++  R S++ V  PT+
Sbjct: 172 RYWQCQGGYPRLQRCPAMLVFDRRSLRCVVPPTE 205


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory
          receptor candidate 60 protein.
          Length = 364

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 22 SYFNYYFYCYTL 57
          S FN  FY YTL
Sbjct: 44 STFNIVFYMYTL 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,728
Number of Sequences: 336
Number of extensions: 2667
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)