Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0038
         (337 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    26   0.12 
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    26   0.12 
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    24   0.37 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   0.49 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   2.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   3.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   3.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   3.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   3.5  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   4.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   4.6  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    20   8.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   8.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    20   8.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   8.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    20   8.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    20   8.0  

>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 25.8 bits (54), Expect = 0.12
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 44  RKRHFSAPSHI--RRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 184
           RK+HFS+ S+   +R+ M   L K   +  N+    IR++ +  +  GH
Sbjct: 252 RKKHFSSSSYSSRKRLAMLDLLLKYKSEGANIDDEGIREEVDTFMFEGH 300


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 25.8 bits (54), Expect = 0.12
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 44  RKRHFSAPSHI--RRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 184
           RK+HFS+ S+   +R+ M   L K   +  N+    IR++ +  +  GH
Sbjct: 252 RKKHFSSSSYSSRKRLAMLDLLLKYKSEGANIDDEGIREEVDTFMFEGH 300


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 24.2 bits (50), Expect = 0.37
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 314 HTLKGECRHMLLHHWPFLFESS 249
           HT + +C H LL H P L + S
Sbjct: 352 HTPEPDCIHELLGHMPLLADPS 373


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = -1

Query: 328 QLDNHTL*RVNADICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNF 161
           +L+N++L  +N  +    +GL+ LN  + ++   +I      N + F V+ +  +F
Sbjct: 320 KLENYSLQLINHRVVFTAMGLYVLNMEHFFSVKCSIQSESLLNDILFPVAGFISDF 375


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +2

Query: 71  HIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYR 226
           HI R +  S   +   ++   KS+P+RK  E++  +  +K      ++   R
Sbjct: 576 HIMRSITESGGRRRQTREKRKKSLPVRKLLELERAQHEFKNGDSSSLLDKMR 627


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 268 GQWCNSICRHSP 303
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 268 GQWCNSICRHSP 303
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 268 GQWCNSICRHSP 303
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 268 GQWCNSICRHSP 303
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 269 PFLFESSQCIQQTFYDTPASLCQPVGLCS 183
           P+L  SS  +  T  D   ++C P+  CS
Sbjct: 124 PYL--SSYVLMATAIDRHQAICYPLTYCS 150


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 32  RRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVK 136
           +R+   RH +   + R    ++P S    Q FN +
Sbjct: 275 QRRTHTRHTTTSHNTRGTPRTTPASSRCGQLFNTE 309


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 29  SRRKNRKRHFSAPSHIRRVL 88
           + RKNR   +  P  +RR++
Sbjct: 82  TNRKNRVLQWREPEELRRLM 101


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 337 IHLQLDNHTL*RVNAD 290
           I + +DNHTL  ++ D
Sbjct: 294 IEVSIDNHTLSVISTD 309


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 100 GRGHQHSPYM*RSTEMPLPVFPS 32
           GR  QH  +   S   P PV P+
Sbjct: 174 GRMRQHVMHNLSSVPQPQPVLPT 196


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = +2

Query: 188 KGQQVGKVMQVYRKKFVVYIERIQREK 268
           +G +V K+ ++Y +    Y++  ++ K
Sbjct: 473 EGWKVEKIQEIYLEALRAYVDNRRKPK 499


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 100 GRGHQHSPYM*RSTEMPLPVFPS 32
           GR  QH  +   S   P PV P+
Sbjct: 174 GRMRQHVMHNLSSVPQPQPVLPT 196


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 100 GRGHQHSPYM*RSTEMPLPVFPS 32
           GR  QH  +   S   P PV P+
Sbjct: 174 GRMRQHVMHNLSSVPQPQPVLPT 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,565
Number of Sequences: 336
Number of extensions: 1638
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6579502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)