Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0031
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   1.8  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   1.8  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   2.4  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   2.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   3.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.2  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   4.2  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   5.5  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   5.5  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   9.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 454 IKYFQYNILFNINFTSYFPTRII 386
           I+YFQ  +LF +NF  +   +++
Sbjct: 150 IEYFQMYVLFFVNFAFFVVVKML 172


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 454 IKYFQYNILFNINFTSYFPTRII 386
           I+YFQ  +LF +NF  +   +++
Sbjct: 150 IEYFQMYVLFFVNFAFFVVVKML 172


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
 Frame = -3

Query: 264 SPVEVSYVCAIDNHHNTYIQTKSINKICRKLHWYFFNIYSSIPLQSRITRALKGDFF-SS 88
           S V+  +    D  HN Y   K +  IC+ +      I     L+   +      F+ +S
Sbjct: 5   SKVKSYFTTHHDTLHNIYTSMKPVYAICKLIGLNTLRIGRKGELKQHKSDYFYFSFYITS 64

Query: 87  LNLFNVFTYYYI*DTEDLNTVLS--MPFLVC 1
             L +V++ + I   E+ + V++  + F+ C
Sbjct: 65  YTLLSVYSLFRIATNENNSLVINKRLIFIEC 95


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
 Frame = -3

Query: 264 SPVEVSYVCAIDNHHNTYIQTKSINKICRKLHWYFFNIYSSIPLQSRITRALKGDFF-SS 88
           S V+  +    D  HN Y   K +  IC+ +      I     L+   +      F+ +S
Sbjct: 5   SKVKSYFTTHHDTLHNIYTSMKPVYAICKLIGLNTLRIGRKGELKQHKSDYFYFSFYITS 64

Query: 87  LNLFNVFTYYYI*DTEDLNTVLS--MPFLVC 1
             L +V++ + I   E+ + V++  + F+ C
Sbjct: 65  YTLLSVYSLFRIATNENNSLVINKRLIFIEC 95


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 204 TKSINKICRKLHW 166
           TKS NKI  KL W
Sbjct: 381 TKSANKIAMKLFW 393


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 633 FEYLLKYLLHKITDHIL 583
           FEY + + L K T+H++
Sbjct: 779 FEYAIGHWLQKATEHVI 795


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 633 FEYLLKYLLHKITDHIL 583
           FEY + + L K T+H++
Sbjct: 779 FEYAIGHWLQKATEHVI 795


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 633 FEYLLKYLLHKITDHIL 583
           FEY + + L K T+H++
Sbjct: 779 FEYAIGHWLQKATEHVI 795


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 633 FEYLLKYLLHKITDHIL 583
           FEY + + L K T+H++
Sbjct: 779 FEYAIGHWLQKATEHVI 795


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 201 KSINKICRKLHWYFFNIYSSIPLQSRITRALKG 103
           +SI   C + H +FF +   +P+ + +   L+G
Sbjct: 372 RSIGLKCLE-HLFFFKLIGDVPIDTFLMEMLEG 403


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 387 FKSAYFDLTLSLN 349
           FK+AYF L LS++
Sbjct: 130 FKNAYFQLVLSIS 142


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -3

Query: 207 QTKSINKICRKLHWYFFNIYSSIPLQSRITRALKGDFFSS 88
           ++K+  K+   +H Y +N  S +P        +  D+++S
Sbjct: 380 ESKADIKMYADMHQYGYNTLSPLPSSVHSHSTIGNDYYNS 419


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 633 FEYLLKYLLHKITDHIL 583
           FEY + + + K T+H++
Sbjct: 205 FEYAVGHWMQKATEHVI 221


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 633 FEYLLKYLLHKITDHIL 583
           FEY + + + K T+H++
Sbjct: 519 FEYAVGHWMQKATEHVI 535


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 633 FEYLLKYLLHKITDHIL 583
           FEY + + + K T+H++
Sbjct: 752 FEYAVGHWMQKATEHVI 768


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 633 FEYLLKYLLHKITDHIL 583
           FEY + + + K T+H++
Sbjct: 752 FEYAVGHWMQKATEHVI 768


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,549
Number of Sequences: 336
Number of extensions: 2907
Number of successful extensions: 24
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)