Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0003
         (317 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       20   7.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   7.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   7.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   7.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        19   9.5  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    19   9.5  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 114 SPTPCRSN 137
           SP PCR+N
Sbjct: 111 SPNPCRNN 118


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 299 PVHRLVSVTGDWVALV 252
           P+H    +TG WV L+
Sbjct: 122 PIHTSSYMTGIWVWLI 137


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 299 PVHRLVSVTGDWVALV 252
           P+H    +TG WV L+
Sbjct: 355 PIHTSSYMTGIWVWLI 370


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 299 PVHRLVSVTGDWVALV 252
           P+H    +TG WV L+
Sbjct: 355 PIHTSSYMTGIWVWLI 370


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 289 DLYPSPVIG 263
           +LYPSPV G
Sbjct: 321 ELYPSPVPG 329


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 15  RAHASSATHRHVRVTLT 65
           R H S +  R +R+T+T
Sbjct: 148 RVHHSGSITRSIRLTIT 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,744
Number of Sequences: 336
Number of extensions: 1629
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5942776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)