Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0001
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    26   0.31 
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    26   0.31 
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   5.0  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   5.0  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 275 PLPYIINFKKNCTKWCRN 328
           PLP +++  KNC  +C N
Sbjct: 272 PLPIVLSIVKNCLSYCFN 289


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 275 PLPYIINFKKNCTKWCRN 328
           PLP +++  KNC  +C N
Sbjct: 272 PLPIVLSIVKNCLSYCFN 289


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 7   IIFYFWYLIRNNWNIF 54
           I+  FWY +  + NIF
Sbjct: 262 IVVIFWYTVNASTNIF 277


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 7   IIFYFWYLIRNNWNIF 54
           I+  FWY +  + NIF
Sbjct: 262 IVVIFWYTVNASTNIF 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,534
Number of Sequences: 336
Number of extensions: 1979
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)