Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0034
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.0  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 235 LVLEVTQHLGXNTCSDHCHGRY*MLSPW 318
           ++++V  HL  ++ + H HG +   SP+
Sbjct: 118 VIIDVVNHLSSDSTTIHWHGHHQKNSPY 145


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 684 SVRXTLSXSSNPRVTTMGLANIVDQFHNQ 598
           S+R  +   S PRV T  + N ++Q+  +
Sbjct: 99  SIRPGVIGGSKPRVATPEVENRIEQYKRE 127


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 592 TXLIMELINNVCQAHGXYSG 651
           T L    ++N+CQA   Y G
Sbjct: 535 TRLANSALDNICQASDMYKG 554


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 284  WSEHVXSPKCWVTSSTRR 231
            WS    SP  W T++TRR
Sbjct: 1043 WSSTTTSP-WWTTTTTRR 1059


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,126
Number of Sequences: 336
Number of extensions: 2419
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)