Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0043
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   2.4  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   2.4  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   3.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.3  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 240 TVSNKSTYQPQSISPLHQADSNCTKFLYGK 329
           T  N+++  PQS S  + A     +FLY +
Sbjct: 153 TSPNEASMSPQSTSSNNSASPKACQFLYNQ 182


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 240 TVSNKSTYQPQSISPLHQADSNCTKFLYGK 329
           T  N+++  PQS S  + A     +FLY +
Sbjct: 173 TSPNEASMSPQSTSSNNSASPKACQFLYNQ 202


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 202 VNFATFNLGHVWILCQTNQLINPNQSVLCTKLIVIVRNFYMV 327
           +NF    LG +++      ++  NQ+  CT LI +++N  +V
Sbjct: 223 INFVVL-LGDLYVTLYI--ILTNNQAKYCTTLIGLIKNCVIV 261


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +1

Query: 208 FATFNLGHV---WILCQTNQLINPNQSVL 285
           F  F L H+     LC  N +INP+Q  L
Sbjct: 598 FVAFLLKHIVPKLQLCMQNLVINPHQQHL 626


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,779
Number of Sequences: 336
Number of extensions: 2974
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)