Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120064.Seq
         (451 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    23   1.8  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    23   1.8  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    20   9.4  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 35  YLRVTSSATSEDINLDYF 88
           Y    + A  EDIN+DYF
Sbjct: 121 YSTTITRARFEDINMDYF 138


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 35  YLRVTSSATSEDINLDYF 88
           Y    + A  EDIN+DYF
Sbjct: 121 YSTTITRARFEDINMDYF 138


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +1

Query: 196 VSCGVKVKPGFEKYYVLSSFSVLVDVCXXXXXXXACIKMLSYL 324
           V+C   V  G   YYV  +F  L +         A I  +S L
Sbjct: 487 VACSKTVSDGIRHYYVNVTFPHLFNGLVDYSLWKALIFQISNL 529


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,140
Number of Sequences: 336
Number of extensions: 1780
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)