Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060069.seq
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   1.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.0  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 182 PANGEGSLIACITYGSYSFACTEP 111
           P  G G L  C+    +S  C EP
Sbjct: 341 PQEGLGELAVCVNERPWSLYCGEP 364


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 285 DRLIRIWLFDRHYTWHFENE 226
           +R I+IW  +R   W  EN+
Sbjct: 283 ERQIKIWFQNRRMKWKKENK 302


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 285 DRLIRIWLFDRHYTWHFENE 226
           +R I+IW  +R   W  EN+
Sbjct: 285 ERQIKIWFQNRRMKWKKENK 304


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 362 HLAFFGRPVSVSSVSNLTFSAKSFEEI 282
           HL+  G P++  S ++L  +A   EE+
Sbjct: 517 HLSLEGNPITTLSNTSLLGAANQLEEL 543


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 454  TTTAAATFKRKMEKLTSYPIH 516
            TTT + TFK K  +    PIH
Sbjct: 1407 TTTNSLTFKLKPHESDVEPIH 1427


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,294
Number of Sequences: 336
Number of extensions: 3081
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)