Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060052.seq
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   5.3  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   7.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.1  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 491 ASIVNLKCTNLSVHFPTP 438
           ASI +   T+L +H+P P
Sbjct: 148 ASIFHAAATSLPLHYPPP 165


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 537 FFYYYLKKLANQNN*RVNCKLKMY*PFRSFPNSIIEA 427
           F+Y + + +A  N  R+  KLK    F  F  +I EA
Sbjct: 232 FYYMHQQIIARYNFERLCNKLKRATRFNDFNEAIKEA 268


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 219 STGGALTTPASSVKLPKY*SISEPTT 142
           ST  A +   S+ ++P Y + S PT+
Sbjct: 23  STSSATSIDLSTFRVPTYGTTSHPTS 48


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 219 STGGALTTPASSVKLPKY*SISEPTT 142
           ST  A +   S+ ++P Y + S PT+
Sbjct: 23  STSSATSIDLSTFRVPTYGTTSHPTS 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,643
Number of Sequences: 336
Number of extensions: 3190
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)