Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021008
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   4.8  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   4.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   6.3  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   6.3  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    22   6.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.3  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 775 YVCLIFKTTQRILMRFFLIDRVI 707
           Y  L++  T  ILMR+  ++RVI
Sbjct: 163 YQLLLYLITDMILMRYKELNRVI 185


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 343 IYHLITNLMLNTKGISDVCFKGKKKHLLSGALL*NFLD 456
           IY+L     +   G SD+   GK    ++  L+ +F+D
Sbjct: 359 IYNLEIQRFIQQIGNSDIAITGKNFFSITRGLILSFVD 396


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 35  GDGNHSPSGGPCARL 79
           G GN+ P GGP + +
Sbjct: 530 GSGNNQPPGGPSSHV 544


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 161 NKSLNNAIVYNSVVDGNIVIFFLLPL*ADEHTAHLMVSGYRRPWTSAMPGAE 6
           NK   N+  Y ++  G+ V++          T H+   G+  P+T  M G E
Sbjct: 466 NKEEGNSCQYCNIAFGDAVLY----------TIHMGYHGFHNPFTCNMCGVE 507


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 102 NYDVPIYNRVIDY 140
           +YD+P  N+V+D+
Sbjct: 184 SYDIPEINKVVDF 196


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 199 QYTYATIILYRISIN*YSIVRLSIMIIY 282
           QY  A+    ++SIN  S+V+L I  +Y
Sbjct: 184 QYNIASSKTLKLSINIISLVQLWIFQLY 211


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 97   KKITMFPSTTEL*TIALFNDLF 162
            KK+T+ PS +    IA F+D F
Sbjct: 1295 KKVTVSPSASVPAKIASFDDTF 1316


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 636 K*SEGGSLVSNKTHFNNKDKCRVLSEMSIKSN 541
           K  + GS + +KTH N    CR+    ++  N
Sbjct: 75  KAKDEGSCIIDKTHRNQCRACRLKKCQNVGMN 106


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 636 K*SEGGSLVSNKTHFNNKDKCRVLSEMSIKSN 541
           K  + GS + +KTH N    CR+    ++  N
Sbjct: 75  KAKDEGSCIIDKTHRNQCRACRLKKCQNVGMN 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,578
Number of Sequences: 336
Number of extensions: 3695
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)