Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0023
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    27   0.11 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.7  

>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 121 RHVHEDHPSLRAGDRRRGTLPAVRLRT 201
           RH HE+H + RA    RG +P  +++T
Sbjct: 260 RHFHEEHDTRRASS--RGIIPRAKIKT 284


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 218 IYNSETPPEYDLRKITLPIYLLYSRNDLLS 307
           IYN +   EYD   + LP     S N + S
Sbjct: 58  IYNIQNNFEYDTASLPLPGLYTKSANTIRS 87


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 561 PPPHVFN 541
           PPPHV+N
Sbjct: 280 PPPHVYN 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,000
Number of Sequences: 336
Number of extensions: 3876
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)