Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0015
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   0.98 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.0  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 351 NYHIYHET*GRYSKNLRHGISVPLCFV 431
           N+  Y E    +  ++RH +S+  CFV
Sbjct: 116 NFPYYRENKQGWQNSIRHNLSLNKCFV 142


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 623 IFFVAFFITEGRILELTLASRELFPPRPVLNFTWGGCDW*TS-*GGYLVTPAAT*SAVAF 447
           +FFV  F  E     L  ASRE +  R +++    GCD   S   GY+    +  SA  F
Sbjct: 229 LFFVKVFRPEPLCERLFEASREEYVTRHLIDGRIIGCDQRISFIAGYMTEEVSGLSAFKF 288


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 354 YHIYHET*GRYSKNLRHGISVPLCFV 431
           +  Y +   R+  ++RH +S   CFV
Sbjct: 174 FPFYRQNQQRWQNSIRHSLSFNDCFV 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,193
Number of Sequences: 336
Number of extensions: 2811
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)