Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A20
         (844 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   5.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   7.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   7.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   7.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.2  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 580 RHPWSRPTQSARTGRTASTVRRP 512
           RH  SR  +  +TGR   T R P
Sbjct: 209 RHNQSRSKRQPKTGREDQTRRNP 231


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 634 KYRPKQPWPVSICVSRKVRHPWSRPTQSA 548
           K   K P P++     K  HPW +  Q A
Sbjct: 46  KLSNKSPPPLADAAVGKGFHPWKKSPQGA 74


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -3

Query: 527 DGSEAGR--RVCQAARPRLQHGPPRVEPPRSNYTFAGA 420
           D   +GR  R  +  +P  + G P  E  R    F+GA
Sbjct: 201 DRPSSGRSPRTRRVKKPGAKQGAPTAEEKRPRTAFSGA 238


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -3

Query: 476 QHGPPRVEPPRSNYTFAGAPFPPRAEVATP 387
           Q GPP  +PP       G   P     A P
Sbjct: 200 QQGPPHQQPPIQQQPNQGQQPPGNTAAALP 229


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -3

Query: 476 QHGPPRVEPPRSNYTFAGAPFPPRAEVATP 387
           Q GPP  +PP       G   P     A P
Sbjct: 202 QQGPPHQQPPIQQQPNQGQQPPGNTAAALP 231


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 345 PWDLEAEALA 374
           PWD  AEALA
Sbjct: 332 PWDKNAEALA 341


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,664
Number of Sequences: 336
Number of extensions: 3059
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23244256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)