Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40036
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    32   0.13 
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    28   1.6  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   2.7  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   2.7  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   6.3  
SPAC13F5.07c |||previusly annotated as dubious, may not be prote...    26   6.3  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    26   8.3  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1018

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 293  KKVNLEAWQDSVEGPDILARTNKWIKDKV 379
            KKVNL +W +S E  + L R  KW  DK+
Sbjct: 937  KKVNLPSWAESPELREQLKRQQKWDPDKI 965


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -3

Query: 660 VSGHHIHLDITATLQHGIVNTTRSAAFVVKPILMVIEDKMIKYIMSFLKTINSQE 496
           V+  ++ +D+ A  ++ I       A V+ P+++  ED  IKY+ +F   +NSQ+
Sbjct: 439 VTSINLMVDVVAFFENNIKPDLLQPAGVIHPMVLA-ED--IKYVFTFRNQLNSQQ 490


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 147 GSFSKRQL-AELRRVSLARLICDNTDMKQ 230
           GS+ K  L +ELR+  L  L+C+NT +K+
Sbjct: 201 GSYLKENLKSELRKGRLDELMCENTALKE 229


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 207 CDNTDMKQLQRDVFETLLIATLSC 278
           C+N  +  +  DV +TLL+ T SC
Sbjct: 28  CENAGLTAVVNDVIDTLLLGTSSC 51


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 41   SSWFSSRTNCY*SI*GTIVAYSHRGPLFLQP 133
            S W     NC+ S+ G I++ S   P+F+ P
Sbjct: 1009 SGWLFFSINCFLSVAGGILSVSSAMPIFMIP 1039


>SPAC13F5.07c |||previusly annotated as dubious, may not be protein
           coding|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 27  MAEKHLPGSLLGPTATSLFKEQLWRTRIADRYFYSHVNEAGSFSKRQLAELRRVSLARL 203
           + E  +  SL G TA S    Q W  ++ D     HV+E+     R+L E   V+  +L
Sbjct: 9   LGEDDIVNSLDGITALS----QEWIDKVVDAINEGHVSESDERESRKLGEKMNVNSQKL 63


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 763 LVP*LVTFSLEGSPNIEHIDIETRKRPVFRGPKSRKWTSYPL 638
           ++P L     +G+PNI H+  E++   +   P++ +    PL
Sbjct: 500 IIPKLAPIDEKGNPNISHLK-ESKSLDITHSPQNTQTVEVPL 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,761,884
Number of Sequences: 5004
Number of extensions: 79128
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)