Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40034
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    56   9e-09
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    28   2.1  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    28   2.1  
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.7  
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc...    27   3.6  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   6.3  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   6.3  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    26   6.3  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    26   8.3  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.3  

>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 25/60 (41%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
 Frame = +3

Query: 333 KIPRSRKVNQSYFSSVFSTIYSTLITVPVIY--KFK-PNVIFCNGPGTCIPICVVAFILR 503
           K+PR+R V QS+ ++ F+  +S L ++ VI+   F  P+VI CNGPGTC+ IC++ ++ +
Sbjct: 96  KVPRARYVKQSWLTTPFTAFWSLLGSISVIFWNPFGIPDVILCNGPGTCVFICLLGYLAK 155



 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 24/61 (39%), Positives = 34/61 (55%)
 Frame = +2

Query: 479 LCSCIYIENLFLLDCRIVFIESICRVRSLSLTGKILQYFADLVVVHGPQLRDVSLRAKIF 658
           +C   Y+      + +IV++ES  RV+SLSL+GKIL  F D  +V  P L     RA+  
Sbjct: 147 ICLLGYLAKFLGKNVKIVYVESFARVKSLSLSGKILMPFVDRFLVQWPDLATKYKRAEYI 206

Query: 659 G 661
           G
Sbjct: 207 G 207



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 64  FTALVIGVIARVIYLLIKIFTTECALYQDSNLRSIFCIGSGGHTTELLRFMRNLNCRKYY 243
           +    I V+A +I LL+     + +  +      +   GSGGHT E+L  +  L+ + Y 
Sbjct: 4   YVLTAIAVLASLIILLVGRNAIKSSKKKPFQKHLLVFFGSGGHTGEMLNLLNALDDKLYS 63

Query: 244 PR 249
            R
Sbjct: 64  VR 65


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 746 IPFYQSVSQGGWQCPCH 796
           +P  ++   GGW CPCH
Sbjct: 178 VPIGEAGDYGGWFCPCH 194


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 846 PTWTSEWSTHGSMDHPQWQGHCQPPWLTDW*NGIIKKRLS 727
           P W   W +H   + P  Q H +   + DW +GI+K R++
Sbjct: 389 PFWEEIWKSH---ELPSIQFHLEAS-INDWTSGILKNRIT 424


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 467 LYSNLCSCIYIENLFLLDCRI 529
           L++  C CIY  + FL DC I
Sbjct: 42  LFAFFCPCIYFLHTFLADCEI 62


>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = +3

Query: 222 FKLSEILSTVVILADNDINSESKIFEAENKQSTYLLNKIPRSRKVNQSYFSSVFSTIYST 401
           ++  E L+  V L + DI    +      K    L+NK+  ++   +  F S+ +   S 
Sbjct: 125 YRRGETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKLTEAQDKLEELFPSIMADFQSN 184

Query: 402 LITVPVIY 425
              +PV+Y
Sbjct: 185 HPKLPVLY 192


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 447 FCNGPGTCIPICVVA 491
           F  G G C+P+CVVA
Sbjct: 235 FFGGYGACVPLCVVA 249


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 876 GNP*ARPACAPTWTSEWSTHGSMDHPQWQGHCQPPW 769
           GNP  R  C       + +  +M +P  QGH QP W
Sbjct: 250 GNPPFRRLCGSLGADTFYSEMAMCYPLMQGH-QPEW 284


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 36  GNFIVSMFNIYCSSDRSNSQSYLF 107
           GN I  +FN+ C   R+ +Q Y+F
Sbjct: 118 GNVIFIVFNMACGLARTKAQMYIF 141


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 16  KRPFHIMEILSFLCLIFTALVIGVIARVIYLLIKIF 123
           +RP H++     + LI  +L++G +  ++YLL   F
Sbjct: 274 RRPLHLLCTQPIMILI--SLIVGTVYGILYLLFTAF 307


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 234 EILSTVVILADNDINSESKIFEAENKQSTYLLNKIPRS 347
           E ++  ++ A ND+ S++K  +AEN++    LN    S
Sbjct: 47  EQINLQLVYAINDLRSKTKELKAENEKEDTFLNSFNAS 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,909,084
Number of Sequences: 5004
Number of extensions: 86286
Number of successful extensions: 253
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)