Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40031
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    28   0.65 
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    26   2.6  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   4.6  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   4.6  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   6.1  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   8.0  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    25   8.0  

>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 438 CMRTGEFFWKHLKYLNT*STGVFPSSFPQ-LSI-TVTTSMSFGKDAAAT 298
           C+  G+  W   +++NT + G+FPS+F   L I TV    S  + +A++
Sbjct: 35  CLSIGDGKWWIGRHINTNTQGIFPSNFVHCLDIPTVRPGSSMSRTSASS 83


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 367 IFLSAALDNSDHVY-VFRERRSCNLTDDSIIFIERSEFL 254
           I++  A D   H Y   R R S  + DD IIF E +EF+
Sbjct: 46  IYMQMASDELLHFYWKERARVSREVEDDYIIFPEEAEFI 84


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 246 NKLSSGMVRPLYIHRHVLLLSRLHPS-RFHSNTPESGLS 133
           N +++  ++PL +H   L  S+ HP   FH +  ES  S
Sbjct: 207 NSVAATTLKPLQLHNTPLQTSQEHPKPSFHPSQFESSFS 245


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 270 SAPNFCKRNKLSSGMVRPLYIHRHVLLLSRLHPSRFHSNT 151
           + PN  +RN    G   P+ IH + + +S   PS   SN+
Sbjct: 376 TTPNLSRRNSSDFGPNSPVNIHSNPVPISGQQPSSPASNS 415


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 349 LDNSDHVYVFRERRSCNLTDDSIIFIERSEFL*AQ*TKFWNGSSSLYS 206
           L N +  Y   E ++ +L+DD++   +R E+L  + TK     +SL S
Sbjct: 87  LKNIEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLVKTLNSLNS 134


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 232 WNGSSSLYSPARITSI 185
           WNG S+ YSP  + +I
Sbjct: 342 WNGGSNTYSPTALAAI 357


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 317 PKDIDVVTVIESCGKEDGNTPVDQVFKYFKCFQKNSPV 430
           PKDI+VV    +   E  N PV +       +  N+P+
Sbjct: 87  PKDINVVLAFANASGEQYNNPVAEKLLKDAIYNCNTPL 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,226
Number of Sequences: 5004
Number of extensions: 40797
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)