Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40030
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 61 2e-10
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 46 5e-06
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 44 2e-05
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 40 5e-04
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 35 0.018
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 34 0.031
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 33 0.054
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 32 0.12
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 32 0.12
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 31 0.29
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 31 0.29
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 30 0.38
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 30 0.50
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 29 0.66
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 29 0.66
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 29 0.87
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 29 0.87
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 29 0.87
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 29 1.2
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 1.5
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 28 2.0
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 28 2.0
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 27 2.7
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 27 2.7
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.7
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 3.5
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 27 3.5
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 3.5
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 27 3.5
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 27 4.7
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 27 4.7
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 27 4.7
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 27 4.7
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 27 4.7
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 27 4.7
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 26 6.1
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 26 6.1
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 26 6.1
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 8.1
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi... 26 8.1
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 8.1
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 26 8.1
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 26 8.1
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 8.1
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 61.3 bits (142), Expect = 2e-10
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTA---NIERHKYNHELPVLDVCF-RDAVHSYSGGLDQTLKMYD 422
+YL SSWD VR+Y+V A +I + Y H+ PVL V + RD SG +D++ K++D
Sbjct: 43 EYLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDKSAKVFD 102
Query: 423 LNASTETILGEHKGAIRCVEFASEL 497
+ + H A+RCV F +
Sbjct: 103 IQTGQNQQVAAHDDAVRCVRFVEAM 127
Score = 43.2 bits (97), Expect = 5e-05
Identities = 24/52 (46%), Positives = 29/52 (55%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNICM 661
ATGSWD T+K WD R + T + ERVY M V V T+ R NIC+
Sbjct: 134 ATGSWDKTLKYWDLRQSTPIATVSL-PERVYAMDCVHPLLTVATAER-NICV 183
Score = 26.2 bits (55), Expect = 6.1
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +3
Query: 273 SWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSY----SGGLDQTLKMYDLNAST- 437
S D S +++D+ + H+ V V F +A+ + +G D+TLK +DL ST
Sbjct: 93 SVDKSAKVFDIQTGQNQQVAAHDDAVRCVRFVEAMGTSPILATGSWDKTLKYWDLRQSTP 152
Query: 438 -ETI-LGEHKGAIRCV 479
T+ L E A+ CV
Sbjct: 153 IATVSLPERVYAMDCV 168
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 46.4 bits (105), Expect = 5e-06
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 3/200 (1%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDVTANIER-HKYNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNAST 437
L+ WD S+ Y ++ N E KY+ P+L + + D + G LD T+ DLN
Sbjct: 28 LIAGCWDGSLLHYQISENPELLGKYDLSSPILSLEYTDEKTALVGNLDGTVTTLDLNTRN 87
Query: 438 ETILGEHKGAIRCVEFASELNAVLQEAGMEQSKCGIAEFQTVSALTIREMNGYTQ*A*LA 617
LG H + C+ N + +G + + + + +++ G A +
Sbjct: 88 HEFLGNHGKGVSCISKLRLENCFI--SGSWDKSFRVWDVRVKQPVEGQDI-GKKIFASSS 144
Query: 618 KSS*LV--HXDVKIFVWDVRNMGHVNQRRDPHSNIQPRCLRVFPHKQGLRISSIRGTCCG 791
+ + LV + + V+D+RN+ QRR R + + +G SSI G
Sbjct: 145 RDNILVLGCSERENLVYDIRNLKLPFQRRPSSFKYMTRSVCCNQNFEGFVSSSIEGRT-- 202
Query: 792 GVFWVXKS*GAEEEIMPFKC 851
V ++ S A+ + FKC
Sbjct: 203 SVEYINPSQEAQSKNFTFKC 222
Score = 34.7 bits (76), Expect = 0.018
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 500 CSATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNI 655
C +GSWD + ++WD RV V + G ++++ S V+G S R+N+
Sbjct: 109 CFISGSWDKSFRVWDVRVKQPVEGQDIG-KKIFASSSRDNILVLGCSERENL 159
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQG-NERVYTMS 607
TGSWDGT+K+W +PN V T N G N R+ T++
Sbjct: 121 TGSWDGTIKLWLGNLPNSVQTLNNGSNSRILTVA 154
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 39.9 bits (89), Expect = 5e-04
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDVTANIERHKY-NHELPVLDVCFR-DAVHSYSGGLDQTLKMYDL-- 425
Y L +SWD ++RL+D+ H++ H VL V D SG D+T+K++++
Sbjct: 77 YALSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWNIIG 136
Query: 426 NASTETILGEHKGAIRCVEFA-SELNAVLQEAGMEQS 533
N G H + CV F+ + N AG +++
Sbjct: 137 NCKYTITDGGHSDWVSCVRFSPNPDNLTFVSAGWDKA 173
Score = 37.1 bits (82), Expect = 0.003
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 270 SSWDCSVRLYDV-TANIERHKYNHELPVLDVCFR-DAVHSYSGGLDQTLKMYDLNASTET 443
+ WD +V+++D+ T ++ Y H V V D SGG D TL ++DLN ST
Sbjct: 168 AGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHL 227
Query: 444 ILGEHKGAIRCVEFA 488
E K I + F+
Sbjct: 228 YSLEAKANINALVFS 242
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGE-KFVVGTSGRKNI 655
+ SWD T+++WD C + V ++SI + + VV S K I
Sbjct: 80 SASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTI 129
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 34.7 bits (76), Expect = 0.018
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 336 HELPVLDVCFRDAVH-SYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVL 509
H PV+D+ F D +YS G D T+K +DL K + CVE ++L+ V+
Sbjct: 268 HTGPVMDIVFSDDPSVAYSVGQDHTIKTWDLITGQNVDSKITKAPLLCVEKLTDLHLVI 326
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 330 YNHELPVLDVCFRDAVHS-YSGGLDQTLKMYDLNAS 434
Y HE PVL VC A H +SGG D T++ + L A+
Sbjct: 336 YGHEGPVLCVCVPKATHHIFSGGHDGTIRCWSLPAN 371
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 33.1 bits (72), Expect = 0.054
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRK 649
+ S D T+++WD R PNC G N + V G F S RK
Sbjct: 129 SASLDNTIRLWDLRSPNCQGLLNVSSPVVAAFDATGLIF-ASVSERK 174
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 31.9 bits (69), Expect = 0.12
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYN 577
AT S DGTVK+WD R P+ Y+
Sbjct: 99 ATSSEDGTVKVWDMRAPSVQRNYD 122
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVP-NCVGTYNQGNERVYTMSIVGEKFVVGTSG 643
ATG +G V +WD R + T+N + + ++S E++ V TSG
Sbjct: 121 ATGDDNGCVSVWDKRTEGGIIHTHNDHIDYISSISPFEERYFVATSG 167
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 30.7 bits (66), Expect = 0.29
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 279 DCSVRLYDVTANIERHKY-NHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNAST 437
D +R++D+ + + H P+ + F D+ H YSG D +++++DL + +
Sbjct: 515 DGLIRIWDLRIGLPVRSFIGHTAPISSLQF-DSNHLYSGSYDNSVRIWDLRSGS 567
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNI 655
TGS D T+++WD + T + V +S+ ++F + NI
Sbjct: 306 TGSMDSTIRLWDLAAGKTLTTLTHHKKTVRALSLHPDEFTFASGSSDNI 354
Score = 22.2 bits (45), Expect(2) = 7.9
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 509 TGSWDGTVKMWD 544
TG+ D T+K+WD
Sbjct: 180 TGAGDRTIKIWD 191
Score = 21.8 bits (44), Expect(2) = 7.9
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +2
Query: 521 DGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGR 646
D VK WD + Y+ VY + + V+ T+GR
Sbjct: 226 DKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTAGR 267
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGT 571
TGSWD T+K W+ CV T
Sbjct: 107 TGSWDHTIKKWNVSTGECVET 127
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +3
Query: 279 DCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTE 440
D +R++D T + Y+ + + + S LDQT++++DL S +
Sbjct: 285 DEEIRVWDTTTGNVKDIYSGHYESVTKILQWKSYLISSSLDQTIRVWDLEYSAD 338
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.50
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDVTANIE-RHKYNHELPVLDV-CFRDAVHSYSGGLDQTLKMYDLNA 431
YL+ +S+D + RL+DV +E + H + + C D SGG D +++DL +
Sbjct: 279 YLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRS 338
Query: 432 STE-TILGEH 458
+L EH
Sbjct: 339 GKSIMVLDEH 348
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 506 ATGSWDGTVKMWDS 547
A+GSW G VK+W+S
Sbjct: 188 ASGSWGGQVKVWNS 201
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFV 628
AT +DG VK+W+ + + + E+V ++ G++F+
Sbjct: 409 ATSGYDGCVKLWNPLNCSLIKSMVGHEEKVMSVDGYGDRFI 449
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 29.5 bits (63), Expect = 0.66
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTS 640
+GSWD TV++W+ + C+ +E + ++SI + + T+
Sbjct: 155 SGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSISADGTLCATA 198
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 29.5 bits (63), Expect = 0.66
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERV 595
+GS D T+K+WD NCV ++ +++V
Sbjct: 272 SGSADTTLKLWDLSTCNCVKSFTYHSDKV 300
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 506 ATGSWDGTVKMWDS--RVPNCVGTYNQGNERVYTMSIVGEK---FVVGTSGRKNI 655
ATGS D VK+W++ P V + + RV+T S ++ F + SG K +
Sbjct: 400 ATGSTDRVVKLWNTSDSSPKMVVSRDLDVGRVFTCSFTTDESTAFHLAASGSKGV 454
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 387 SGGLDQTLKMYDLN-ASTETILGEHKGAIRCVEFASELNAVLQEAGMEQS 533
SG D TLK++DL+ + H + C+++ S+ +VL +++
Sbjct: 272 SGSADTTLKLWDLSTCNCVKSFTYHSDKVSCLDWYSKAPSVLLSGSYDKT 321
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNI 655
ATGS D T +MWD R V +N + V + + + + ++ I
Sbjct: 503 ATGSSDHTTRMWDVRTGGTVRVFNAHHSPVSALCMSADGLSLASADESGI 552
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 29.1 bits (62), Expect = 0.87
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 264 LVSSWDCSVRLYDV-TANIERHKYNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLN-AST 437
L S D +V+++D+ T ++ HE V + A SGG D T++++D A
Sbjct: 140 LSGSDDKTVKVWDLSTGAVQYDLSGHEDYVRTASWMSATRLVSGGYDGTIRLWDTRIADP 199
Query: 438 ETILGEHKGAIRCV 479
E + H AI V
Sbjct: 200 EVMSFSHGEAIDVV 213
Score = 27.9 bits (59), Expect = 2.0
Identities = 7/15 (46%), Positives = 14/15 (93%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRV 553
+G +DGT+++WD+R+
Sbjct: 182 SGGYDGTIRLWDTRI 196
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 29.1 bits (62), Expect = 0.87
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGT 571
A+GS D VK WD R C+ T
Sbjct: 222 ASGSKDNLVKFWDPRTGTCIAT 243
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYN 577
+GSWD V WD + + TYN
Sbjct: 249 SGSWDKMVYYWDLNTGDAISTYN 271
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERV 595
TG+ DG +K+WD C+ T+ Q V
Sbjct: 356 TGADDGKIKVWDMNSGFCIVTFTQHTSAV 384
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 506 ATGSWDGTVKMWD 544
A+GSWD TV++WD
Sbjct: 483 ASGSWDKTVRIWD 495
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 354 DVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASEL 497
D CF + + + ++ + + A+T LGE++GA+ C A+ +
Sbjct: 1199 DECFESKNYEAAKLMYSSISNWSMLATTLVYLGEYQGAVDCARKANSI 1246
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.9 bits (59), Expect = 2.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 515 SWDGTVKMWDSRVPNCVGTYN 577
S+D T+K+WD+ + C+ +N
Sbjct: 329 SFDKTIKLWDTELGKCLNCFN 349
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMS 607
+GS DGTVK+W + + + +YN +R + ++
Sbjct: 245 SGSEDGTVKIWHTLSYSLIKSYNFSLDRAWCIA 277
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDVTANIERHKYNHELPVLDV 359
++V+ DCS+R + Y H LPV D+
Sbjct: 272 IIVAGADCSIRFMSLDLTKLSQVYKHSLPVTDM 304
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +2
Query: 422 FEC*HGDYPRRAQRSYTLCR-VRI*T*CSATGSWDGTVKMWDSRV--PNCVGTYNQGNER 592
FE G R Q L R VR +G +DGTV++W+ +CV +N N R
Sbjct: 414 FEASSGKLLRMLQGHEDLIRTVRFNDEKIVSGGYDGTVRIWNFNTGEQHCV-LHNSRNSR 472
Query: 593 VYTMSIVGEKFVVGT 637
V+ + + + T
Sbjct: 473 VFGLQFDHRRIIACT 487
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIV 613
TGS D TV++WD R C + + + IV
Sbjct: 461 TGSTDRTVRVWDLRTGECKQVFYGHTSTIRCIKIV 495
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSI 610
+ S+DGT+++W + C+ RVY+++I
Sbjct: 592 SASYDGTLRVWKASTGVCLHVLRGHVGRVYSVTI 625
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 521 DGTVKMWDSRVPNCVGTYNQGNERVYTMS 607
DG VK+W CV T + +RV+ ++
Sbjct: 570 DGLVKVWSLSSGECVATLDNHEDRVWALA 598
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMS 607
A+ S D T+K+WDS VG V+ S
Sbjct: 481 ASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACS 514
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 613 NYAHCVYPFISLIVSADTVWNSAI-PHFDCSIPASCSTALSS 491
NY H V+ F + SAD S++ P + PA+ ++A+SS
Sbjct: 263 NYDHDVFSFAPSVASADQFTESSMSPTPEVVSPAATNSAISS 304
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDVTANIERHKY-NHELPVLDVCFR-DAVHSYSGGLDQTLKMYD 422
YLL + DC +R +DV + +Y H+ P+L + D +G D L ++D
Sbjct: 340 YLLTACADCVIRKWDVRSGQLLGEYTGHQEPILCMAITPDGKRVVTGSDDTELLVFD 396
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNICMGR 667
A G+ +G+V++WD+ T + ERV +S V+ + GR N + R
Sbjct: 307 AVGTHNGSVEIWDAATCKKTRTMSGHTERVGALS--WNDHVLSSGGRDNHILHR 358
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTS 640
+GS D T+++W+ R C+ + + V ++ V G++
Sbjct: 328 SGSMDKTIRIWNYRTSECISILHGHTDSVLCLTFDSTLLVSGSA 371
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 515 SWDGTVKMWDSRVPNCVGT 571
S DGT+K WD CV T
Sbjct: 451 SLDGTIKQWDIEKKKCVHT 469
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEK-FVVGTSGR 646
TGSWD T ++W + C V+ + +GE F+ G++ +
Sbjct: 114 TGSWDSTARVW--ALGQCKYVLKGHQSSVWAVLALGEDIFITGSADK 158
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 26.6 bits (56), Expect = 4.7
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +2
Query: 506 ATGSWDGTVKMW 541
A+GSWDG +++W
Sbjct: 427 ASGSWDGNIRLW 438
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 506 ATGSWDGTVKMWDS 547
ATGSWD V++W S
Sbjct: 290 ATGSWDECVRLWSS 303
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSI 610
TG++D VK+WD N G +N + ++ +++
Sbjct: 316 TGAFDNAVKVWDME-GNLCGIFNAPTDYIHKLAL 348
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 521 DGTVKMWDSRVPNCVGTYNQ 580
D T+K+WDSR +C+ T +
Sbjct: 157 DCTMKVWDSRSKDCIKTIEE 176
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTM 604
T S D T+K+W R C+ ++ ++ V+ +
Sbjct: 233 TASSDATIKLWSLRAQKCLFSFIAHSDSVWAL 264
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVG 568
ATGS D T++ WD + + +G
Sbjct: 193 ATGSMDNTIRFWDPKKGSPIG 213
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSI 610
+ S D T+++WD V T+ + N+R + +++
Sbjct: 273 SASEDKTIRVWDLNRRTAVQTFRRDNDRFWFITV 306
>SPAC1851.02 |||1-acylglycerol-3-phosphate
O-acyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 393 GLDQTLKMYDLNASTETILGEHKGAIRCVEFASELN 500
GL T+ + E IL +HK A+ V SEL+
Sbjct: 77 GLASTILDFRFKIENEEILRKHKSAVLVVNHQSELD 112
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 550 SAIPHFDCSIPASCSTALSSDANSTQRIAPLCSPRIVSVLAFKSYILRV*SSPPL 386
S + H+DCS S + + + I PLCS VL ++ V S L
Sbjct: 237 SNVYHYDCSPLPSLNKETRNYSQQNGFICPLCSKNSKDVLCNTGFVSGVSSGQDL 291
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/37 (21%), Positives = 20/37 (54%)
Frame = +2
Query: 521 DGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVV 631
+G +K+WD C+ T ++ + ++ ++ F+V
Sbjct: 250 EGKIKIWDIDTMECISTQSETDGAIWAVAWYKNGFIV 286
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 506 ATGSWDGTVKMWDS 547
A+GS DG VK+WD+
Sbjct: 81 ASGSGDGAVKLWDA 94
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCF-RDAVHSYSGGLDQTLKMYDLN 428
+YLL S D SV L+D + Y H V C+ D + +G D + + LN
Sbjct: 268 RYLLSCSCDKSVILWDAFTGEKLRDYKHGFSVSCCCWLPDGLSFITGSPDCHITHWSLN 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,991,313
Number of Sequences: 5004
Number of extensions: 89416
Number of successful extensions: 335
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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