Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40028
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   4.8  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   6.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   8.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   8.4  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 472 KRKAGIGRDLGQSGTPLSMEIFLNNESASVYGLLVNYMHVTDTGKQQET 618
           KRK  +G  L Q    + +EI+ ++   ++Y  ++NY    +  +  E+
Sbjct: 179 KRKTRLGARLEQVMRDVELEIYKDSPLETLYNQIINYAETDEIRRLTES 227


>SPCC417.08 |tef3||translation elongation factor
            eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 304  PRGYLCPLRLKREAPQSNEEGLQSIPFR-LRRAQRAEHHSL*RREGTRAGLGSHRQAKRK 480
            PRG L     K  A     E L+S  FR L R +  EH SL    G  A L SH + K  
Sbjct: 848  PRGELMETHAKMVAEVDRAEALKSGQFRPLVRKEIEEHCSL---LGLDAELVSHSRIKGL 904

Query: 481  AG 486
            +G
Sbjct: 905  SG 906


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 550 TRCSGISPWTTACLTDRDLARYLLSVLLDDGSQDRLWCLPFFITSDVQHVGLV 392
           T CSGI     ACL D D    L   +L+   +  L+ LP  I      + L+
Sbjct: 282 TSCSGIVNDLEACLDDIDKGLILNDHVLEKTGRTSLFYLPCSIYGREHEIKLI 334


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 673 VTKFSNRYGSTEHPFQNLSFP 611
           + K S   G+T HP+ N SFP
Sbjct: 182 IQKNSLHTGNTSHPYANASFP 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,809,068
Number of Sequences: 5004
Number of extensions: 83320
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)