Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40026
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    29   1.1  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    27   4.6  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   4.6  
SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   6.1  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    26   8.1  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 691 FQTPNSMLIDWPLRFFGPTLFQHGFNGKCNSLPIFGP 801
           FQ P+S L  +  R+    + +HG  G  N L ++GP
Sbjct: 401 FQPPSSKLGTYAGRYIRYGIREHGMAGIMNGLAVYGP 437


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = -3

Query: 842 GSKKGFTEAFSKGPGPNIGRELHFPLKPC*KRVGPKNLNGQSISILLGVWKIQ 684
           G  K   E   +G GP  GR  H  L       G + L     SI+ G WKIQ
Sbjct: 408 GCTKLTDEVLKQGIGPCCGRLKHLNLS------GLELLTDDEASIVFGEWKIQ 454


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 424 ERLIFSKENIPISCHNCSYKSYPKSL 501
           ER + SKE +  SCH+C  K+  K L
Sbjct: 305 ERFV-SKEKVQYSCHSCGSKNAIKQL 329


>SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 97

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 528 HKHQFLPFFIMTGNEWNQINDFC 596
           HK   +PFFI+   EW +  +FC
Sbjct: 74  HKQHAMPFFIINPTEWKR--NFC 94


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 593 LQKD*SKIGILVECMLRDNHGWNEKNASLLIEFSKPPTV 709
           +QKD   +GIL +  ++   G   +N + L+E  K PTV
Sbjct: 537 IQKDPEVLGILQDPAMQAILGQARENPAALMEHMKNPTV 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,595,905
Number of Sequences: 5004
Number of extensions: 74936
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)