Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40024
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    31   0.21 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    29   0.86 
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    28   1.1  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   8.0  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.0  

>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 166 FYKVSETLKETIAQPKKFSLRSLFTKDAEQIKHLNKKQNIYHLMFQR 306
           F+K   +L E +A+P+  SLR +     EQ++  +  +   H ++ R
Sbjct: 305 FFKHLSSLMEAVAKPESESLREICNLSLEQVQSASGAELFLHALYDR 351


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +1

Query: 112 QEHLEQSQENKIEVSKETFYKVSETLKETIAQPKKFSLRSLFTKDAEQIKHLNKKQNIYH 291
           +E   + +E +I   ++   +V E  KE     KK   R    +   Q K+L+KKQ    
Sbjct: 263 EEQRIREEEARIAEEEKRLAEVEEARKEEARLKKKEKERKKKEEMKAQGKYLSKKQKEQQ 322

Query: 292 LMFQRRKKGIL 324
            + QRR + +L
Sbjct: 323 ALAQRRLQQML 333


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 518 TEGQKDRRELKSLMKRRIYNKERKIKYSTRKLVVEENYEESY 643
           T  +K+ +E K L K  + NK+RK+ YS  KL  E +  E+Y
Sbjct: 548 TAEEKEEKEAKELSKMMMSNKQRKL-YS--KLKNENSKNENY 586


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 610 FSCGIFDFPLFVVNSSLHQ*FKLSSIFLTFCVSSVLKNFKP 488
           ++CGIF FP  +  S L +  + +  +L    +  L + KP
Sbjct: 307 WNCGIFSFPRGITQSQLFELMQYTGFWLVQLRTKPLTSQKP 347


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 258 KAPQQETEYIPLDVPKKKKGNPLDPGEKNP 347
           K     ++Y+P    K+KKG P D   K+P
Sbjct: 183 KKENNNSDYLPKSAMKQKKGGPKD-SSKHP 211


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 121 LEQSQENKIEVSKETFYKVSETLKETIAQPKKFSLRSLFTKDAEQIKHLN 270
           L+ S  +K+ V +E   KV++++  T  QP KFSL    +   + +   N
Sbjct: 450 LQNSPLSKL-VPQEVGNKVNDSIHTTSNQPSKFSLNPSISLKGDNVIEKN 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,838
Number of Sequences: 5004
Number of extensions: 42851
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)