Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40017
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 33 0.070
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 32 0.092
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.21
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 30 0.49
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 30 0.49
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.65
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 29 1.1
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 28 1.5
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 27 2.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 2.6
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 3.5
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 3.5
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 3.5
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 27 4.6
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 27 4.6
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 27 4.6
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 6.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 6.0
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 26 6.0
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 26 8.0
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 32.7 bits (71), Expect = 0.070
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Frame = +2
Query: 245 D*NLTQLQKTEED-KVRLEKLINENSAEVHKNGKLEV--PMLQEKVESLTSAINVAEKNN 415
D NLT L+K D + +LE E +A + +L V L+E ++ ++S+I + EK N
Sbjct: 178 DTNLTNLEKLFADSREQLETKCKELAAAEQQLQELSVHNQQLEESIKQVSSSIEL-EKIN 236
Query: 416 AE-------IEKIKAELHAISQQLASEIEAHKVTKENLKRLNEMLRR 535
AE +EK+KA ++L+S ++ KE L L R
Sbjct: 237 AEQRLQISELEKLKAAQEERIEKLSSNNRNVEILKEEKNDLESKLYR 283
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 32.3 bits (70), Expect = 0.092
Identities = 27/120 (22%), Positives = 61/120 (50%)
Frame = +2
Query: 257 TQLQKTEEDKVRLEKLINENSAEVHKNGKLEVPMLQEKVESLTSAINVAEKNNAEIEKIK 436
TQ ++ +E+K L L ++NS + + + + +++E+L KN+ ++ +I
Sbjct: 470 TQNREIDEEKNHLRLLASKNSDKALAETNIRLQEVTKELETLRM------KNSNDLNEIH 523
Query: 437 AELHAISQQLASEIEAHKVTKENLKRLNEMLRRKMS*VLKWETTKGPLKELTSKMEGNRE 616
+L ++ L +I++ +TKE + +NE+ +R S + G + E +K++ E
Sbjct: 524 -DLREENEGLTLKIDS--ITKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEE 580
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.21
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Frame = +2
Query: 242 TD*NLTQLQKTEEDKVRLEKLINENSAEVHKNGKLEVPMLQEKVESLTSAINVAEKN--- 412
T+ LT L + DK+ + I E + + LE L+E+VES+ S +NV ++
Sbjct: 524 TNVGLTILSQRLLDKLGTAEEIAEYKTK-YNGAMLENKHLKEQVESMLSQLNVGPRDPMQ 582
Query: 413 --NAEIEKIKAELHAISQQLAS 472
+++++KAEL+ LAS
Sbjct: 583 FLKKQLDELKAELNLRDNLLAS 604
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 29.9 bits (64), Expect = 0.49
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Frame = +2
Query: 296 EKLINENSAEVH-KNGKLEVPMLQEKVESLTSAINVAEKNNAEIEKIKAELHAISQQLAS 472
E + +AE K +L++ + +++ ESL+ AE +++E+++ E + + +
Sbjct: 17 EAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAE---SQLEELEEETKQLRLKADN 73
Query: 473 EIEAHKVTKENLKRLNEMLRRKMS*VLKWETTKGPLKELTSKMEGNREKVIQMDRQ 640
E + K E L R E+L ++ ET L+E T KM K +R+
Sbjct: 74 E-DIQKTEAEQLSRKVELLEEEL------ETNDKLLRETTEKMRQTDVKAEHFERR 122
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 29.9 bits (64), Expect = 0.49
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 60 KDEIEKLKHQSLNSSEVPNEDNMSTSTMSKADETARMRDLDETFEEK 200
K+EI+ + + NSSEVP + S+ D T+ + +ET E+K
Sbjct: 7 KEEIKDISSKQENSSEVPKAEEAGKVVESQKDTTSEEKK-EETTEKK 52
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.65
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Frame = +2
Query: 194 GKVYETEAICIKT*EKTD*NLTQLQKTEEDKVRLE---KLINEN-SAEVHKNGKLEVPML 361
GK+ E E K EK + +L LQ TE ++++ E K + N E + KL +
Sbjct: 1288 GKIQELE----KEVEKLNASLNPLQ-TEINELKAEIGAKTASLNLMKEYNSRWKLRFQSV 1342
Query: 362 QEKVESLT-SAINVAEKNNAEIEKIKAELHAISQQLASEIEAHKVTKENLKRLNEMLRRK 538
K E + + + +KN +EK K EL Q+ A E + K +L E L+++
Sbjct: 1343 LNKYERVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKE 1402
Query: 539 M 541
+
Sbjct: 1403 V 1403
Score = 29.1 bits (62), Expect = 0.86
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = +2
Query: 260 QLQKTEEDKVRLEKLINENSAEVHKNGKLEVPMLQEKV----ESLTSAINVAEKNNAEIE 427
++++ RL NE + K+ L++++ + LTS E EIE
Sbjct: 1402 EVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELTNKNKELTSKNAENEAMQKEIE 1461
Query: 428 KIKAELHAISQQLASEIEAHKVTKENLKRLNEMLRR 535
+K H + + +S +A ++TKE ++L R
Sbjct: 1462 SLKDSNHQLQESASS--DAEQITKEQFEQLKSEKER 1495
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +3
Query: 21 KMLEEKDIIIISLKDEIEKLKHQSLNSSEVPNEDNMSTSTMSKADETARMRDLDETFEE 197
K+ + D +I SLK++IE K +SL N + +S T ++RDL F+E
Sbjct: 1056 KIRSDADRVITSLKEDIE--KERSLMKE---CHSNYESEIVSHGRTTQKLRDLRTEFDE 1109
Score = 27.1 bits (57), Expect = 3.5
Identities = 36/117 (30%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = +2
Query: 263 LQKTEE-DKVRLEKLINENSAEVHKNGKLEVPMLQEKVESLTSAINVAEKNNAEIEKIKA 439
L K E D +LE+L A + +LE LQE + + N E+E +K
Sbjct: 1343 LNKYERVDPTQLEELKKNCEALEKEKQELETK-LQETAKETDTFKQQVNSLNEEVENLKK 1401
Query: 440 ELHAISQQLASEIEAHKVTKENLKRLNEMLRRKMS*VLKWETTKGPLKELTSKMEGN 610
E+ + + A ENLK+ L R LK E T KELTSK N
Sbjct: 1402 EVEQANTKNTRLAAAWNEKCENLKK--SSLTRFAH--LKQELT-NKNKELTSKNAEN 1453
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 28.7 bits (61), Expect = 1.1
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Frame = +2
Query: 281 DKVRLEKLINENSAEVHKNGKLEVPMLQEKVESLTSAINVAEKNNAEIEKIKAELHAISQ 460
D++ + IN+N A K K + LQEK+ +A+++ +I ++ +L A ++
Sbjct: 841 DELSSMESINKNQANELKLAKQKCSNLQEKI---NFGNKLAKEHTEKISSLEKDLEAATK 897
Query: 461 ---QLASEIEAHKVTKENLKRLNEMLRRKMS*V--LKWETTKGPLKELTSKMEGNREKV 622
L+ E++ K ++LK ++ + K V K++ L E K+ E++
Sbjct: 898 TASTLSKELKTVKSENDSLKSVSNDDQNKEKSVNNEKFKEVSQALAEANEKLNARDEEI 956
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 51 ISLKDEIEKLKHQSLNSSEVP---NEDNMSTSTMSKADETARMRDLDETFEE 197
I+LK +IE+ + L S+ NE+N TST + A+ A + +T EE
Sbjct: 202 INLKQKIEEENDEILEDSKESKDENEENKETSTTNVAETDAPEEETVDTVEE 253
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 407 KNNAEIEKIKAELHAISQQLASEIEAHKVTKENLKRLNEMLRRKMS*VLKWETTKGPLKE 586
K AE+EK KAELHA Q+L + ++ ++N L + R + + E ++ KE
Sbjct: 43 KPYAELEKRKAELHA--QKLKLVQKRQQLLRDNYNVLVDYARNQDAFYQLLENSRHDFKE 100
Query: 587 L 589
L
Sbjct: 101 L 101
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2
Query: 341 KLEVPMLQEKVESLTSAINVAEKNNAEIEKI--KAELHAISQQLASEIEAH-KVTKENLK 511
+L + L+EKV L + + K E+E + K +L+ + E+EA K N+K
Sbjct: 1068 ELTINNLEEKVNYLEADVKQLPKLKKELESLNDKDQLYQLQATKNKELEAKVKECLNNIK 1127
Query: 512 RLNEMLRRK 538
L + L K
Sbjct: 1128 SLTKELENK 1136
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 30 EEKDIIIISLKDEIEKLKHQSL-NSSEVPNEDNMSTSTMSKADETARMRDLDETFEE 197
+E++ I S +DE ++ HQ L ++SE+ N D+ + + + D+DE+ E
Sbjct: 79 DEEEDSITSFQDEDDETSHQELSDNSEMNNRDDADDEFLGFSG-PENLEDVDESSAE 134
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/84 (20%), Positives = 40/84 (47%)
Frame = +2
Query: 293 LEKLINENSAEVHKNGKLEVPMLQEKVESLTSAINVAEKNNAEIEKIKAELHAISQQLAS 472
LE+ IN++ ++G + ++ ++ LTS + + ++ ++EK E + + + +
Sbjct: 170 LERRINQSILVTGESGAGKTETTKKVIQYLTSVTDASTSDSQQLEKKILETNPVLEAFGN 229
Query: 473 EIEAHKVTKENLKRLNEMLRRKMS 544
A V N R + +R + S
Sbjct: 230 ---AQTVRNNNSSRFGKFIRIEFS 250
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 27.1 bits (57), Expect = 3.5
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 290 RLEKLINENSA--EVHKNGKLEVPMLQEKVESLTSAINVAEKNNAEIEKIKAELHAISQQ 463
RL++ + + A + +++ KL + EK++ L S+I + + ++ + + Q
Sbjct: 48 RLQESVKKLDANKKTYEDAKLS---MGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQ 104
Query: 464 LASEIEAHKVTKENLKRLNEMLRRKMS*VLKWE 562
+ SEI+ K+NL ML+R V +E
Sbjct: 105 MTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYE 137
>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 572 GPLKELTSKMEGNREKVIQMDRQ*I-PTRGLLP 667
G ++ K+ GN+ KVI +D Q I P G+LP
Sbjct: 60 GSWSQVAKKLVGNKGKVIGIDIQHIAPPEGVLP 92
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 54 SLKDEIEKLKHQSLNSSEVP-NEDNMSTSTMSKADETARMRDLDET 188
S+ I K ++ E P N+ST T SK T R DE+
Sbjct: 8 SIPTSIRKTSENEVSGDETPAGVGNLSTKTASKTSLTFRQSSSDES 53
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 114 NEDNMSTSTMSKADETARMRDLDETFEEKY 203
NE N K+DE R+R LDE + Y
Sbjct: 152 NEANKKRERQEKSDEEQRLRLLDEQIKRAY 181
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 6.0
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +2
Query: 260 QLQKTEEDKVRLEKLINENSAEVHKNGKLEVPMLQEKVESLTSAINVAEKNNAEIEKIKA 439
+L+K++E +L++ NEN ++ +N + E VES + EK + E +K+
Sbjct: 131 RLEKSDETVCKLKEE-NENLQDMLRN------VGNELVESRDEIKELIEKQKVQKESVKS 183
Query: 440 ELHAISQQLASEI 478
+S ++SEI
Sbjct: 184 HESELSSVMSSEI 196
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 15 AIKMLEEKDIIIISLKDEIEKLKHQSLNSSEVPNEDNMSTSTMSKADETARMRDLD 182
A+ LE+K + ++K IE SS++ +E+N ST + + + + + LD
Sbjct: 287 AVDKLEDKPVSNDNIKANIESSTTVDRASSQLESENNESTFFVHNQNSSGQHQTLD 342
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/47 (25%), Positives = 29/47 (61%)
Frame = +2
Query: 371 VESLTSAINVAEKNNAEIEKIKAELHAISQQLASEIEAHKVTKENLK 511
V + +N+ E ++AEI+K+K ++ + + + + E +VT+ N++
Sbjct: 114 VNNEMEGLNLQEMDDAEIKKVKVDISKVWRSILA--EKPRVTRFNIQ 158
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 114 NEDNMSTSTMSKADETARMRDLDETFE 194
N D +T+ DET R+R L + F+
Sbjct: 482 NNDTSIITTLESTDETGRLRQLAKLFD 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,157
Number of Sequences: 5004
Number of extensions: 52713
Number of successful extensions: 225
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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