Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40015
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    27   4.3  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   5.6  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    26   5.6  

>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 415 APESTRSSKRTLXRGRESVPPIHEHPAAQ 501
           AP++T SS   L + ++S+P  +EH  A+
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEHQRAR 156


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 285 SVCTFEGNTLKQVQKAPDGIEVTYVREFGPEEMKAVMTAKDV 410
           + CT + N    + +  D IE   +   GP E++  M+  DV
Sbjct: 233 TACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 725 APSLTFLIFQGSSTPCFSIAVFKLNGIFFF 814
           +PSL +L FQ  S P   + +F  +  F+F
Sbjct: 138 SPSLLYLFFQAESIPSLLLLIFFASLKFYF 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,050
Number of Sequences: 5004
Number of extensions: 62129
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)