Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40011
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    39   2e-04
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    28   0.38 
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   2.7  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   3.5  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   3.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   3.5  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    24   6.2  
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    24   8.2  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    24   8.2  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 24  LLVTGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPKHFNDDYF 158
           L+VTGP+  N  P+RR+  RYVI TS  +I +    + K F   YF
Sbjct: 80  LVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK-FTKAYF 124


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 28.3 bits (60), Expect = 0.38
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
 Frame = +1

Query: 103 PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKR-------VMTSLPQKKRNTFHLSRQN 261
           P F SA S   N S+ +++      S V    K+       V   LPQ KR      + N
Sbjct: 240 PPFGSAGSPSPNRSLNVSNNTTPPLSTVNKIIKKPKATTGKVKKRLPQAKRACAKCQKDN 299

Query: 262 RSEDSRRGCDQSHRSPTRQEGAPR 333
           +  D  R C +  ++ T     PR
Sbjct: 300 KKCDDARPCQRCIKAKTDCIDLPR 323


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 136 NTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSR-QNRSEDSRR 282
           NT+ +I    I    + +  A  ++T++ +++RN   L R Q+++ED  +
Sbjct: 499 NTNALIKLAEINELQDNRDAALEIVTNIFEQRRNINELEREQSQNEDHEK 548


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 172 SASNVQSNAKRVMTSLPQ--KKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQ 318
           S S++ S   RV   L     +R++  +S++N+S  +     Q+H  P+ Q
Sbjct: 480 SRSDLPSKISRVNAELQAHGSQRSSIDVSKENKSSVADGPSSQAHNGPSTQ 530


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 79  SAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSR 255
           SA  +A      S +S    +S M TS    S S+  S+     +S      +TF+LSR
Sbjct: 436 SASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAHSSGSSSGSSSATSSASTFNLSR 494


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 106 EFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 231
           + HS+ S+ +NT+ +++S   +S+ +V+     V T     K
Sbjct: 735 DLHSSLSDAKNTNAILSSELTKSSEDVKRLTANVETLTQDSK 776


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -1

Query: 348 AALRYPRSTFLSGRAPMALITASSTVF*SVLPAQMERISLFLWQRCHHP 202
           A+ R P S+ LS  AP  L     T    +   Q    SL LW  CH P
Sbjct: 88  ASRRIPVSSLLSEPAPHGL-AGQPTHPTFLYYIQSVAPSLCLWDACHFP 135


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 220 PQKKRNTFHLSRQ 258
           PQKKR T+HL  Q
Sbjct: 23  PQKKRVTYHLDEQ 35


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 207 DDIFATKKEKYVPSEQAKPIRRQSTRL*SKPSE 305
           DD     +E+ +PSEQA   R+Q T+  S  S+
Sbjct: 413 DDNKVFLREQKLPSEQASKKRKQDTQETSSDSK 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,472,011
Number of Sequences: 5004
Number of extensions: 26835
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)