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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30035X
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    31   0.086
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    31   0.15 
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   2.5  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    27   2.5  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    26   3.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   5.7  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.7  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   5.7  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   7.5  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   9.9  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 31.5 bits (68), Expect = 0.086
 Identities = 14/63 (22%), Positives = 34/63 (53%)
 Frame = -3

Query: 532 YNRRV*IIESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN*R 353
           Y  ++ I +++++E+ +    L+ + + +  Q+K LL+ N ++++ +     D  N    
Sbjct: 306 YEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREM 365

Query: 352 NAN 344
           NAN
Sbjct: 366 NAN 368



 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -3

Query: 490 LNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 359
           L S +   E   + +H  L+ L Q+N +++ E+ E+N ++++ N
Sbjct: 520 LKSQIRDQELTIEKLHDSLETLSQTNNSLQCEISEKNAELNSVN 563


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 12/37 (32%), Positives = 27/37 (72%)
 Frame = -3

Query: 496 DELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMRE 386
           D   S+L+ L+R+N+++ +QLK   + NI++++++ E
Sbjct: 646 DSTISSLESLKRENEELREQLKVEHEENISMQKQLSE 682


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 466 ERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 359
           +R+N    Q +++L +SN+ +  +  E  K  SNSN
Sbjct: 550 KRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN 585


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = -3

Query: 514 IIESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNS 362
           I+ + +DELNS    LE     +  + + L      + ++++E  + +SN+
Sbjct: 31  ILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNN 81


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 469 LERKNDDIHQQLKELLQSNIAIRQEMRE 386
           LER+ DD+ Q+L+E+      ++ E+ E
Sbjct: 126 LERERDDMEQKLEEMTDKYTKVKAELDE 153


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 502  TLDELNSALDFLERKNDDIHQQLKE 428
            T  ELNSALD  +++  +IH +LKE
Sbjct: 1349 TRKELNSALDSCKKREAEIH-RLKE 1372


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = -1

Query: 465 SVKMMIFTNN*KSFCNPILQLDKKCVKKIRTSATVIEEMQIQHYFKFNCA 316
           S+ +M+  +    FC+  +    K V K+R + ++  ++  +H+  F+ A
Sbjct: 103 SIGLMLLLSALIGFCSESIVTSVKSVYKLRKAHSIFSKINKRHFDHFSAA 152


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 490 LNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSN 365
           +++ L+ LE   DD + +LKE    NIA +QE+     ++S+
Sbjct: 433 VDAYLNPLEFNFDDKNVKLKEFGSPNIAYKQELNSFQGELSS 474


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = -1

Query: 453 MIFTNN*KSFCNPILQLDKK-CV--KKIRTSATVIEEM 349
           ++ ++N K+F NP++ L +K CV  +K+    TV ++M
Sbjct: 202 LLHSSNLKAFINPLIPLTQKFCVQLQKLFADLTVSDQM 239


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 247 YHLSIFSDQYHKVSVSF--K*CIIIHLQYLSMNNYLACLHHLNVISCIFMSVG 95
           Y++S     Y+ + + F  +  +++HL+    +++    HH+   + I +S G
Sbjct: 195 YYMSPLFKAYYLIQLGFWLQQILVLHLEQRRADHWQMFAHHIVTCALIILSYG 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,705
Number of Sequences: 5004
Number of extensions: 37801
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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