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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30034
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   128   1e-30
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   128   1e-30
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    44   3e-05
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    44   3e-05
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    34   0.017
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   1.5  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   4.5  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   6.0  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.9  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  128 bits (308), Expect = 1e-30
 Identities = 59/74 (79%), Positives = 65/74 (87%)
 Frame = -1

Query: 477 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 298
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 297 AAQDVAEKCKTLGI 256
           AAQD A KCK +GI
Sbjct: 65  AAQDAAAKCKEVGI 78



 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 24/49 (48%), Positives = 28/49 (57%)
 Frame = -3

Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
           ALHIK+RA           GAQ          M+IGRIEDVTP+P+DST
Sbjct: 80  ALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  128 bits (308), Expect = 1e-30
 Identities = 59/74 (79%), Positives = 65/74 (87%)
 Frame = -1

Query: 477 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 298
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 297 AAQDVAEKCKTLGI 256
           AAQD A KCK +GI
Sbjct: 65  AAQDAAAKCKEVGI 78



 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 24/49 (48%), Positives = 28/49 (57%)
 Frame = -3

Query: 253 ALHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 107
           ALHIK+RA           GAQ          M+IGRIEDVTP+P+DST
Sbjct: 80  ALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
           K E+  L R+NPR+++WTVLYRR  KKG  E
Sbjct: 35  KSESLFLQRKNPRRLSWTVLYRRMHKKGISE 65


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKKGQEE 643
           K E+  L R+NPR+++WTVLYRR  KKG  E
Sbjct: 35  KSESLFLQRKNPRRLSWTVLYRRMHKKGISE 65


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 551 KCEAAHLMRRNPRKVTWTVLYRRKFKK 631
           KC     M+RNPRKV WT  YR+   K
Sbjct: 35  KCHKNFKMKRNPRKVAWTKAYRKAHGK 61


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 375 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 274
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 446 CLV*HTFSLHSMTHSFMLLIYPAGKLSPVSLVA*R*RLTVMKRHPTLLCWR 294
           CLV  T S++ + +  ++          VSLV    +L ++KR P LL W+
Sbjct: 317 CLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWK 367


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 467 WGPRVTWTSSLATLFF 514
           +GPR+ WTSS ++L F
Sbjct: 304 FGPRIFWTSSQSSLMF 319


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 403 RSCY*FIRP--GNYRPCHWWHEGE 338
           RSC+  +R    N++ C WW EG+
Sbjct: 347 RSCHSALRSIFTNFKGCTWWIEGD 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,195
Number of Sequences: 5004
Number of extensions: 54321
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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