Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30022
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    34   0.025
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.8  
SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...    26   5.1  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    26   5.1  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    26   6.7  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 63   VNTTLVVGACWQGTEKDMKHHLRGWLAGLGVLRGAAQPSHAL-SCLARCREGLSLAPDLC 239
            VN  ++  A W+ +++  K   + W+  LGV      PSHAL +C A       LA DL 
Sbjct: 1110 VNQEILRNA-WEASQRSTKDDWQEWIRRLGVALLRESPSHALRACAALAAAYQPLARDLF 1168

Query: 240  NYS 248
            N S
Sbjct: 1169 NAS 1171


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 701 TPHYIPYMSHVYVDNSNSTNHLDYLALWN 615
           +PH IP  S+ +V++ +S   LDY  L++
Sbjct: 574 SPHPIPPSSYSFVESPSSILRLDYFLLFD 602


>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 704 STPHYIPYMS-HVYVDNSNSTNHLDYLALWNDNGFSVICIHGDC 576
           S P Y+ +++ H Y ++     +L+Y+  W +  +    I+  C
Sbjct: 28  SNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREPEYVKFIIYPTC 71


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 695 HYIPYMSHVYVDNSNSTNHLDYL 627
           ++IP ++ +++DN NS  +LD L
Sbjct: 382 NFIPSLNSIFIDNLNSFKNLDSL 404


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -2

Query: 134 TAEV-VLHILLGALP-TSADDEGGVDSVRGVQGPVVNNFG 21
           T E+ +L  +L ++P  S  D+  +DSVRGV G  +++FG
Sbjct: 351 TTEIEILRDILPSIPKVSVMDDTLIDSVRGVPGD-ISHFG 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,883
Number of Sequences: 5004
Number of extensions: 55252
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)