Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30013X
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.49 
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   0.64 
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   2.6  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   4.5  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    24   7.9  

>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 138 IVNYFLLLDCFFVYLQIKNGT 200
           ++++FLL+ C F Y  I NG+
Sbjct: 94  VISFFLLIGCLFAYWFINNGS 114


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 224 RDIVVPGFHEALCLVRVFNGFGSGKVNLFYYYY 322
           R+I +PG  EALC+ +    + SG V  FY  Y
Sbjct: 216 REIQLPGIEEALCITKAAVSYVSGIV--FYTTY 246


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 149 LSSPRLFFCLFTNKKRHDSMYRVLCRDIVVPGFHEALCLVRVFN---GFGSGKV 301
           LSS RL   L  N K  D    +  R I+ PG H   CL+ ++N    F SG+V
Sbjct: 197 LSSGRL---LHLNLKDSDGNSSIQVR-ILFPGLHIPNCLLSLYNSIFAFTSGRV 246


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 137 YCKLLSSPRLFFCLFTNKKRHDSMYRVLCRDIVVPGFHEA 256
           YC+ L+    FF LF ++++   M  + CR   +P  H+A
Sbjct: 404 YCQSLNFLAGFFLLFMSEEKAFWMLVITCRK-YLPKMHDA 442


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 300 TFPLPKPLKTRTRHSASWKP 241
           TF LP PL +   +S+SW P
Sbjct: 273 TFFLPMPLISHPLYSSSWIP 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,119
Number of Sequences: 5004
Number of extensions: 26418
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)