Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10400
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   102   2e-23
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    31   0.081
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   1.7  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   4.0  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   4.0  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   4.0  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    24   7.0  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    24   7.0  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  102 bits (245), Expect = 2e-23
 Identities = 49/88 (55%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
 Frame = +3

Query: 6   KHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLD 185
           +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V++AILED+VFP EI+GKR R   D
Sbjct: 90  RHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATD 147

Query: 186 GSQLIKVHLDKNQQTTIEHKVDT-SSLY 266
           G + IKV LD     T+++K+ + SS+Y
Sbjct: 148 GRKTIKVFLDNRDANTVDYKLGSFSSVY 175



 Score = 33.9 bits (74), Expect = 0.009
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +2

Query: 248 GHLQSVYKKLTGREVTFEFP 307
           G   SVY KLTG+ VTFEFP
Sbjct: 169 GSFSSVYHKLTGKNVTFEFP 188


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 30.7 bits (66), Expect = 0.081
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 9    HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 188
            H V V D+ +   P       N+Q   R  +L+ + D + +  V   E V  R   K  G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650

Query: 189  SQLIKVHLD-KNQQTTIEHKV 248
            S ++   LD K+ Q   EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 80  KEATLKDIDLCVRCYPRGLGLPC 148
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 98  P*AWPLLFVSNTSFVAGLRQDLTVSN 21
           P A  +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 42  PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 167
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 229 VCWFLSKCTLMSCEPSNLTLMR 164
           +C FL K T  SC   NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 170 DALAYDLSREDQVLEDSIVHR 108
           D L YDL R + V+ D  +H+
Sbjct: 214 DGLKYDLKRSEDVVYDLRIHK 234


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 158 YDLSREDQVLEDSIVHRGQCP*AWPLLFVSN 66
           YD   +D  L++ I H   CP A+ L   +N
Sbjct: 76  YDWEDDDDPLKEHITHSPSCPWAYILSSKNN 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,534
Number of Sequences: 5004
Number of extensions: 24736
Number of successful extensions: 70
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)