Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10391
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   145   5e-36
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    28   0.91 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.2  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   6.4  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   8.5  
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.5  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  145 bits (351), Expect = 5e-36
 Identities = 68/106 (64%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
 Frame = +1

Query: 241 KNRQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 420
           K +  E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 421 NGHIGLGVKCSKEVATAIRGAIILAKLSVYQFEE-VTGVTRSESHT 555
           +GH+GLG+KC+KEVATAIRGAII+ KLS+        G    + HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = +3

Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 602
           +P+RRGYWG  +G PHTVP KV+GKCGSVTVR
Sbjct: 136 MPIRRGYWGTALGDPHTVPVKVSGKCGSVTVR 167



 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 16/22 (72%), Positives = 21/22 (95%)
 Frame = +2

Query: 182 KEDQKEWVPVTKLGRLVREGKI 247
           ++++KEWVPVTKLGRLV+ GKI
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKI 49


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 540 SCYPSNLFELVNRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 373
           SCY   + E ++R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 365 SCY---MPESLSRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 179 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 54
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 334 EVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVYQ 513
           E+ +++PVQK   AGQ   F   +   D     G  +   +  A  ++G +IL    V +
Sbjct: 123 EIDQVIPVQKILNAGQNLWFNEIILFEDELADNGKSMFDVR--ARVVQGHLILLARLVVR 180

Query: 514 FEEV 525
            ++V
Sbjct: 181 LDKV 184


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 290 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 400
           +SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 469 AIRGAIILAKLSVYQFEEVTGVTRSESHTPSLARSPAS 582
           AI GA+ ++++ VYQ ++     +SE  T  LARS A+
Sbjct: 82  AIVGAVQVSRILVYQRQQKRITAQSEQRT-ELARSLAA 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,019
Number of Sequences: 5004
Number of extensions: 44783
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)