Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20032
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    58   2e-09
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    26   6.3  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
 Frame = +1

Query: 511 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY-HIYLIFG 678
           LF  A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LY H++  FG
Sbjct: 190 LFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFG 246



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 29/63 (46%), Positives = 34/63 (53%)
 Frame = +2

Query: 248 PTINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 427
           P +NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L G
Sbjct: 102 PRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTG 161

Query: 428 ISS 436
           ISS
Sbjct: 162 ISS 164



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 84  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR* 257
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR 
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 258 II*DFDSYPPPL 293
               F   PP L
Sbjct: 105 NNFTFWLLPPAL 116


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -1

Query: 703 KLKYNFRMSQKSNKCDIKLGLLLQQD 626
           +++Y+  ++ K+ K DIK+G+L+ QD
Sbjct: 263 QIEYSMEITDKT-KADIKVGILVNQD 287


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 274 TPTPLPYIINFKKNCRKWCRNRMNS 348
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,363
Number of Sequences: 5004
Number of extensions: 39540
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)