Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00018
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    29   0.58 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.1  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   5.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   9.5  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 185  IYDLSCKCPGYTSILHYVELGLARYWLLTLSNTHC-NCCQDELHLLPSHLLNRS 343
            I D + +C       HY  +GL+   + TLSN  C +CC  E  L P +   RS
Sbjct: 1465 ISDGTVQCHNCLEWFHYECVGLSSDIVSTLSNYACPDCCSKEGKLYPWNTRPRS 1518


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 204 LHDKSYMNIANNMPLTAIHFREFARF 127
           L +KSY+  A+NMP T +   E +R+
Sbjct: 75  LREKSYLEGASNMPSTGMVTEEVSRY 100


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 458 YPLACNKLETRLLLLHPIFQFRLPRL 535
           YP ACN +ET LL+   +    LP++
Sbjct: 253 YPAACNAIET-LLINEAVLSSHLPKI 277


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 56  IIEMSLSPN-SSLVRRTIDLNYENKKRANSL 145
           I+E+  SP  + + +RT+ L YEN   A S+
Sbjct: 45  IVEIGPSPTLAGMAKRTLKLKYENMDAALSI 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,844
Number of Sequences: 5004
Number of extensions: 45837
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)