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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0034
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    29   0.85 
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    29   0.85 
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun...    28   1.5  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.0  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   3.4  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   3.4  
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    27   3.4  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    26   4.5  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    26   6.0  

>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 521 TYGSSHGYNNYGSHATY 571
           TYGSS+ Y NYGS   Y
Sbjct: 57  TYGSSNNYGNYGSSNNY 73



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 524 YGSSHGYNNYGSHATY 571
           YGSS+ Y +YG+  TY
Sbjct: 67  YGSSNNYGSYGASNTY 82


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 262 EVSRAILRLDQDCQDLEVSQAIRHHGSGLQARVVNLVILHQDLGCTDQEANQATLHQY-- 435
           E++  + ++ Q+C D    + ++HH     ARV   V    + G   ++  +   H Y  
Sbjct: 145 EITDPLEKMTQECMDAPDCKEVKHHFEECTARVTKKV----EQGDKSEDCIEEFFHLYHC 200

Query: 436 -LDCQDLEVSQVI 471
             DC D +V +V+
Sbjct: 201 ARDCADPKVFKVL 213


>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
           2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 583 LILYVSTVCFMFMSIVILISPYPRFANWAXALY 681
           +I+Y+ST  F++ +I +LI P+    N +  L+
Sbjct: 1   MIVYISTAAFLYYTIWVLIMPFVDNMNISQKLF 33


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 412 NQATLHQYLDCQDLEVSQVIPHRATNPATSHIVPYS 519
           N   L+++LD  D ++   + HR      SH+ PYS
Sbjct: 416 NAKKLNEWLDSLDFKLPIYLFHRKLESELSHLPPYS 451


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -1

Query: 223 VCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSL-MTRTM 47
           V  QI+ A ++   +      +  P+LM      F  L + +  + SSV+FQ+L +   +
Sbjct: 93  VSSQIVFAILVTILNKQALNIINAPLLMLSFQMAFTSLMVKMYWRFSSVHFQTLRLASAI 152

Query: 46  MKNNLVYFRILTIL 5
                ++ +IL I+
Sbjct: 153 QLKKFIFVKILGIV 166


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -1

Query: 238 MKDSLVCLQILIAQILMRDSSAYFQTLII---PILMKDSSAYFQILTIPILMKDSSVYFQ 68
           M D    L   I ++ + +   + Q++I     +++KDS      LT  +L +     F+
Sbjct: 752 MVDLQSILLSCIKRLAIAEQPRFIQSIIYVFAKLIVKDSLGMMHFLTSSLLNEQGLTAFE 811

Query: 67  SLMTRTMMKNNLVYF 23
            LM  T+  +N VYF
Sbjct: 812 VLM--TVWCDNFVYF 824


>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -1

Query: 196 ILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVY--FQSLMTRTMMKNNLVYF 23
           ++ RD + +   L+   L KD+     +L  P+L   +SV    Q+L+ + + + N+V+ 
Sbjct: 110 LVQRDETTFEAKLMFCKLPKDAQDRLVLLLDPLLATGNSVILAIQTLINKGIPEENIVFV 169

Query: 22  RIL 14
            ++
Sbjct: 170 NLI 172


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 527 GSSHGYNNYGSHATYIPHRS 586
           G  H YNN   HAT++ H +
Sbjct: 175 GKGHRYNNSPQHATWLRHNT 194


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 571 YPSSLILYVSTVCFMFMSIVILISPYPRFANWAXALYNH 687
           Y S LILY   V ++  +I ++    P+F N A  +Y H
Sbjct: 102 YWSQLILYYVPVYWLLKAIFLIWLALPKF-NGATIIYRH 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,098
Number of Sequences: 5004
Number of extensions: 44350
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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