Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0055.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 37 0.002
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 36 0.004
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.013
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 35 0.013
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 33 0.030
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 32 0.069
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.16
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.28
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.28
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 30 0.28
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 30 0.37
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.85
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 28 1.5
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.6
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.4
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 26 4.5
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 4.5
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 6.0
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 7.9
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 7.9
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 7.9
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 7.9
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr... 25 7.9
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 37.1 bits (82), Expect = 0.002
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
+++CA+C P +L C HVFC C+
Sbjct: 357 DFECAICSNVAYKPVRLGCSHVFCLHCL 384
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 36.3 bits (80), Expect = 0.004
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKG 242
C++C++ P CGH+FC+ C+ G
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCING 282
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 34.7 bits (76), Expect = 0.013
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 159 DCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQCVAQK 284
+C +C + Q P CGH +C+ C+ ++++ QK
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQK 125
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 34.7 bits (76), Expect = 0.013
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 236
+Y C +CL ++ + CGH+FC C+
Sbjct: 203 DYKCVICLDSPENLSCTPCGHIFCNFCI 230
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 33.5 bits (73), Expect = 0.030
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVK 239
C +C +K ++P LS G VFC+ C++
Sbjct: 257 CKICGEKIKNPAVLSTGFVFCYPCIQ 282
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 32.3 bits (70), Expect = 0.069
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVK---GVAHQAENVQC 272
C +C + Q + C H FC LCV A ENV C
Sbjct: 711 CKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNC 750
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 31.1 bits (67), Expect = 0.16
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKGVAHQAENVQCVAQKF 287
E +C +C P CGH FC C+ Q+ QC +F
Sbjct: 166 ELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSP--QCPTCRF 208
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Frame = +3
Query: 162 CAVCLQKCQH------PTKLSCGHVFCFLCVKGVAHQAENVQC 272
C +C+Q+ P CGH +C+ C+ NV C
Sbjct: 192 CMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSC 234
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 30.3 bits (65), Expect = 0.28
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLS-CGHVFCFLCV 236
C CL++ ++S CGHV+CF C+
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCL 239
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 153 EYDCAVCLQKCQHPT-KLSCGHVFCFLCVKGVAHQ 254
+++C+VCL C P + CGH C C+ + Q
Sbjct: 603 DFNCSVCLDPCLAPVFIIPCGHFTCQECMSMLVGQ 637
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 29.9 bits (64), Expect = 0.37
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVK 239
C +C + + P SC H FC C++
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIR 54
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 0.85
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 147 NMEYDCAVCLQKCQHPTKLSCGHVFCFLC 233
++ + C +C + + P +CGH FC C
Sbjct: 249 DIPFVCLICKKDYRSPIATTCGHHFCEQC 277
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 573 TGGYSFAPAAASMITSTELSHCW 505
T GY+ P A +S E++HCW
Sbjct: 352 TIGYNIKPKHAEGYSSNEITHCW 374
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 141 SHNMEYDCAVCLQKCQHPTKLS-CGH-VFCFLCV 236
S + DC +CLQK +LS CGH F + C+
Sbjct: 14 SRYLRRDCVICLQKDGLRAQLSPCGHDQFDYSCI 47
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 437 FLIQSCYAHHISTNHFFLHNTI 372
FLI+S Y H + N FF H T+
Sbjct: 263 FLIKSFYGH-VQANFFFFHETL 283
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 501 STMYKVPASSKVHSDSPLLKAFSNSELLRSSY 406
S +Y++ HSD P +FS S+ LRS Y
Sbjct: 156 SPLYQI--DEPYHSDEPYAFSFSRSDTLRSLY 185
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 162 CAVCLQKCQHPTKLSCGHVFCFLCVKG-VAHQAENVQC 272
C +C + +CGH++C C++ + H + C
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMC 1129
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 585 GIAGIRTNINQVPIEIKDETEDNVNENH 668
G G+R+ ++Q+P E D T D + H
Sbjct: 328 GEKGLRSELSQIPTENIDSTTDRFDNYH 355
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +2
Query: 392 NGWWKYDERSNSELENAFNNGESECTLLLAGTLYIVDFQQ*LNSVEVIILAAAGAKE 562
N WW + E +E+ + CT+L+ T ++ QQ + V + A++ ++
Sbjct: 399 NIWWVWAESRCTEIPESKRTVFPNCTMLIDKTGRLIILQQTVPQKPVALTASSNKRK 455
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 162 CAVC-LQKCQHPTKLSCGHVFCFLCVK 239
C+VC ++ + CGH FC+ C++
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQ 653
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 512 IVGSQQCTKSQPVVKYTLILHY*RHFLIQSCYAHHISTN 396
++ + QC+ VV LI+ HFL + C H I+++
Sbjct: 740 LIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITSS 778
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 164 CCLLAKMSTSNKTILRSC-FLFSLCEGCSS-SSRKCAMCRTEIPLDYFE 304
C ++K T + + LF +C GCS SS +C++ Y++
Sbjct: 1408 CATISKAVTQHNAYNKKLSLLFDICRGCSKLSSSDPVLCKSNSCKVYYD 1456
>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 7.9
Identities = 6/23 (26%), Positives = 16/23 (69%)
Frame = -3
Query: 216 HDRRIVLLDVDIFASKQHSHIPY 148
H+ +++ D+D+F+ +H +P+
Sbjct: 110 HEEMVIVRDIDVFSLCEHHLVPF 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,235
Number of Sequences: 5004
Number of extensions: 65366
Number of successful extensions: 217
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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