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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0032.Seq
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    80   3e-16
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    54   3e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    49   8e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    48   2e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    46   7e-06
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    45   1e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    45   1e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    44   3e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    43   5e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    42   7e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    42   9e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    42   9e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      41   2e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    40   3e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    40   4e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    39   8e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    38   0.002
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    38   0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    36   0.008
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    34   0.018
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    34   0.018
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    32   0.071
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.12 
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    31   0.12 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    31   0.16 
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    31   0.22 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    31   0.22 
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    30   0.38 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.66 
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.66 
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    29   0.88 
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    28   1.2  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   2.0  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    27   2.0  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    27   2.7  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   4.7  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   4.7  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   6.2  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 36/83 (43%), Positives = 58/83 (69%)
 Frame = +1

Query: 4   SLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKR 183
           SL++++EQ+GE++D  VM+D  T RS+GFGF+T+     V+E   ++ H +DG+I++PKR
Sbjct: 178 SLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKR 236

Query: 184 AVPREEIKRPEASATVKKLFVAG 252
           A+PREE ++        K+FV G
Sbjct: 237 AIPREEQEK------TAKMFVGG 253



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 24/72 (33%), Positives = 43/72 (59%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQH 440
           D  EE+ R +F+ FG ++  +++ DK+TG+ RGFGFV +++   V+    Q    I  + 
Sbjct: 257 DCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKP 316

Query: 441 LDVKKAISKTDM 476
           ++VK+A  K  +
Sbjct: 317 VEVKRATPKASL 328



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = +1

Query: 10  KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRA 186
           + F+ Q+G ++D  +M D  T R +GFGF+TY     V EA  ++P+  I G+ VE KRA
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAV-EATMSQPYITIHGKPVEVKRA 322

Query: 187 VPREEIK 207
            P+  ++
Sbjct: 323 TPKASLR 329



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 23/68 (33%), Positives = 42/68 (61%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDV 449
           ++ LR+YF  FG ++  +V+ D  TG+ RGFGF+ F +   V+ V + + H +  + +D 
Sbjct: 176 DDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV-MSKEHHLDGKIIDP 234

Query: 450 KKAISKTD 473
           K+AI + +
Sbjct: 235 KRAIPREE 242


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ-QNHQIKDQ-- 437
           ++EDL   FS FG I+S  V+ DKETG    + F+EFD+ + V++   + QN  I D   
Sbjct: 256 QDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRI 315

Query: 438 HLDVKKAISK 467
           H+D  +++++
Sbjct: 316 HVDFSQSVAR 325


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 19/41 (46%), Positives = 30/41 (73%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           D+ E+D+   FS FG  V +++V DKETGK +GF F++++D
Sbjct: 41  DLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81



 Score = 34.7 bits (76), Expect = 0.013
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 19  YEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIV 171
           + ++GE VD+ +++D +T +SKGF F+ Y        A +N  + K+  R+V
Sbjct: 51  FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 21/43 (48%), Positives = 27/43 (62%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
           D  EE+LR+ F  FG I  V +  DKETG+ +GF FV + D D
Sbjct: 212 DTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254



 Score = 33.9 bits (74), Expect = 0.023
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           L++ + ++G I  V + KD +T R+KGF F++Y
Sbjct: 218 LRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 22/53 (41%), Positives = 32/53 (60%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           D+ +E L + FS + ++V   VV D+E GK RGFGFV F D D   +   ++N
Sbjct: 40  DVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKN 91


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 19/40 (47%), Positives = 28/40 (70%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
           + DL+E+F   G I  V ++T ++TGK +GFGFV+F D D
Sbjct: 241 DADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280



 Score = 29.5 bits (63), Expect = 0.50
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           + LKE + Q G+I  V +M    T + KGFGF+ +
Sbjct: 242 ADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 19/58 (32%), Positives = 35/58 (60%)
 Frame = +3

Query: 255 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
           + ++++E L+  FS FG I S  ++TD E GK +GFGFV +   +  ++   + N ++
Sbjct: 372 QDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRM 428



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQ 437
           +I E++  + F  FG I S+S+V D +  K RGFGFV + +++   +   + N  + K +
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGK 329

Query: 438 HLDVKKAISK 467
            L V +A  K
Sbjct: 330 KLYVGRAQKK 339



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKDQH 440
           I+ + L + FS FG I+S  V  D E G  +G+GFV FD  +  +      N   + D+ 
Sbjct: 179 IDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKK 237

Query: 441 LDVKKAISKTD 473
           + V   +S+ +
Sbjct: 238 VYVGHHVSRRE 248



 Score = 32.3 bits (70), Expect = 0.071
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 183
           LK  +  +G I    +M D + K SKGFGF+ Y+     ++A      + + G+ +    
Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438

Query: 184 AVPREEIKRPEASATVK 234
           A  R+E++R +  A ++
Sbjct: 439 A-QRKEVRRSQLEAQIQ 454


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 19/50 (38%), Positives = 31/50 (62%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 419
           E+DL   F   G+I S+ + TD ++G+ +GFG+V F D D   + C++ N
Sbjct: 379 EDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK-CVEMN 427



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 183
           L + +E++G IV   V+ D ++ RSKG+G++ +        A   N   +IDGR+V    
Sbjct: 279 LGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDL 338

Query: 184 AVPREEIKRPEA 219
           + PR    +P A
Sbjct: 339 SNPRPANPQPYA 350



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 12/40 (30%), Positives = 28/40 (70%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
           +++++ L + F  +G IV   V+ D ++G+ +G+G+V+F+
Sbjct: 273 NVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312



 Score = 34.7 bits (76), Expect = 0.013
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 31  GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 195
           G+I  + +  DP++ R KGFG++T+S      +      H I GR      + PR
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 183
           L++ + ++G +  V +M++P TK S+GFGF+++S       A +N    +  GR++  ++
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176

Query: 184 A 186
           A
Sbjct: 177 A 177



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKDQH 440
           ++E++L++ FS FG +  V ++ +  T   RGFGF+ F   +         N Q    + 
Sbjct: 112 MQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRV 171

Query: 441 LDVKKA 458
           L+V+KA
Sbjct: 172 LNVQKA 177


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 267 EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 401
           +++DL  +FS  G I    VVT+ ETG+ RG+GFV F   +   R
Sbjct: 17  KQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKR 183
           L  F+   G I   VV+ +P+T  ++G+GF+T+S       A    +  K+ GRI+    
Sbjct: 21  LTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDF 80

Query: 184 AVPRE 198
           A PR+
Sbjct: 81  ATPRK 85



 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           L   + Q+G +    ++KDP T RS G GFI +
Sbjct: 293 LYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 413
           E+DL+  F  FG +  V +  DK+T   +GF +++F D D   R  L+
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 425
           ++E  L + FS  G +V    V   E G+ +G+GFV +D ++  D      N+Q
Sbjct: 110 VDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163



 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD---EAQNNR 144
           L + +   G++V    +   +  RSKG+GF++Y      D   EA NN+
Sbjct: 115 LYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 35/62 (56%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 443
           +  E+L+ +F++ G++  V+++ DK TG  +GF ++EF +   V    L     + ++ L
Sbjct: 66  VTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPL 125

Query: 444 DV 449
            V
Sbjct: 126 KV 127


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           D+ E+ + E F+  G + +  +V D ETG  +G+GF EF D
Sbjct: 17  DVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           + E + Q G +    ++ DP+T   KG+GF  +
Sbjct: 23  MTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 410
           + EEE L  YF   G+I  V +V D +T   +GF +++F D   VD+  L
Sbjct: 280 EAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329



 Score = 33.9 bits (74), Expect = 0.023
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKR 183
           L  ++   G I  V +++DPKT   KGF +I +     VD+A      K+ +GR +   R
Sbjct: 286 LWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMR 345

Query: 184 A 186
           A
Sbjct: 346 A 346


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +3

Query: 258 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           +D   E L+ +F   G + SV + TDK +G+++G+ FVEF
Sbjct: 101 KDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
           E+ +R YFS FG ++ + +  +++TG  + + F+EF+  D
Sbjct: 118 EKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD 157


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 389
           D+ E DL ++F     + S+ +V D  T + RGFG+VEF+  D
Sbjct: 104 DLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETAD 144



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 28  WGE-IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEI 204
           +GE +  + ++ DP T+RS+GFG++ +  A  +  A       + GR V    A PR   
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPRRSF 173

Query: 205 KRPEAS 222
            R E S
Sbjct: 174 AREERS 179


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           ++ EE + + F   G + S  +V D E+G+ +G+GF E+ D
Sbjct: 15  EMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 13  EFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 141
           + ++Q G +    ++ DP++ + KG+GF  Y        A  N
Sbjct: 23  DIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           L+E + ++G I    +   P T+ SKG+GF+++S      +A N     ++G +   KR 
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINT----LNGVLFGKKRL 492

Query: 187 VPREEIKRPEASATVKKLF 243
                 KR +    +  +F
Sbjct: 493 FVNYAEKREDRKKRLSAIF 511



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 273 EDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           + L E FS FG I S ++ +   T   +G+GFV F
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 261 DIEEEDLREYF-STFGNIVSVSVVTDKETGKKRGFGFVEF-DDYDPVDRVCLQQNHQIKD 434
           ++ E D+   F S + +  S  ++TD +T   RG+GFV F D+ D    +   Q     D
Sbjct: 196 NVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGD 255

Query: 435 QHLDVKKAISKT 470
           + + V  A  K+
Sbjct: 256 RPIRVGLATPKS 267



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 16  FYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 108
           F  ++       +M DP+T  S+G+GF+ ++
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           + EE+L+  F  FG IV V +   K      G GFV+F
Sbjct: 314 VSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQF 345


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 32.3 bits (70), Expect = 0.071
 Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEP 177
           +++K++++QWG ++ V V+KD      + + F+ +       +A +   + I DGR +  
Sbjct: 97  ATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRI 153

Query: 178 KRAVPREEIK 207
           +RA     I+
Sbjct: 154 ERAKVNRTIR 163


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 428
           + E  L   F  FG I+SV++   KE    R + FVEFD+ +         N+ I
Sbjct: 17  VTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKEAMENMNYSI 70


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           +E+L  Y + FG + S   + D ET   +G+GF  F++
Sbjct: 309 DENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 14/73 (19%), Positives = 37/73 (50%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 186
           ++ F+  +G++  V + K  +  + KGFG++  +     + A +    ++  R++    +
Sbjct: 773 VETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLS 830

Query: 187 VPREEIKRPEASA 225
            PRE +++   S+
Sbjct: 831 KPRESLEKTRVSS 843


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           +  L + FS FG+I+S  +     +G  +G+GFV F
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432



 Score = 30.3 bits (65), Expect = 0.29
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +1

Query: 1   SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 180
           S L++ +  +G I+  ++   P +  SKG+GF+ + Q      A++     ++G +V  K
Sbjct: 398 SQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDT----LNGMMVGKK 453

Query: 181 R 183
           R
Sbjct: 454 R 454


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 132
           L +F+EQ G + D  +++D  + RSKG  ++ +     V  A
Sbjct: 256 LYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297



 Score = 29.9 bits (64), Expect = 0.38
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 261 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           ++ +ED++  F  FG+I  V +  D +  + +GFG++++
Sbjct: 350 NLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQY 387



 Score = 29.9 bits (64), Expect = 0.38
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 7   LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 105
           +K  +E +G+I  V + +D +  RSKGFG+I Y
Sbjct: 356 VKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 339 ETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLDVKKAISKTD 473
           E  + RGFGFV F + +   R   + N  Q+ D  L VK A+ + D
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 234 KVVCSWTKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           K+  S    ++ E+ + E    FG+++S  ++ +   G  +GF F EF
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 252 TKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 377
           T + +EE      ++T   + +V+++ +KET K R F F +F
Sbjct: 79  TPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKF 120


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +3

Query: 270 EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 383
           + +L + F+  G+++   +  +  TG+ +GFG V+F++
Sbjct: 293 DRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFEN 329


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 489 YPXQTCQFSILLFSHPNVDL*FGDFVASILCQLDHNHQTLQNQSPFSFLFLYLS 328
           Y      F  L F+H   +L FG++  +++  LD  H    N  PF+F + YLS
Sbjct: 176 YGRSNIPFHSLNFTHYIEELSFGEYYPALVNALD-GHYGHANDHPFAFQY-YLS 227


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 264 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 380
           +  E LR +F +FG +  + +  +  TG   G   + FD
Sbjct: 105 VTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFD 143


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 279 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ-QNHQIKDQHLDVKK 455
           L   F ++G ++ V     ++T + RG  FV FD+ +   R     Q + +  + + ++ 
Sbjct: 46  LEHLFGSYGKVIDVQA---RKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQY 102

Query: 456 AISKTDM 476
           + SK+D+
Sbjct: 103 SKSKSDI 109


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 622 NQNPWDDNGGGNWSNQGYGDQGNWGSFGS 708
           + N ++DN   N SN  YG   N+G++GS
Sbjct: 44  SSNSYNDN---NNSNSTYGSSNNYGNYGS 69


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 622 SPSATLTVSLPLVKTTILIS 563
           SP  T TV+LPL K T+L S
Sbjct: 251 SPEQTSTVTLPLRKDTVLFS 270


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 619  GNQNPWDDNGGGNWSNQGYGDQGNWGSFG 705
            G Q PW  NG    SN  Y  +G    +G
Sbjct: 921  GVQPPWSGNGNFPRSNASYNSRGGHEGYG 949


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 64  PKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE-IKRPEASATVKK 237
           P+T+ S+ F F+ Y  +   ++A     +++ GR +E    V R E  K+P  S    K
Sbjct: 41  PRTRTSRPFAFVEYEDSRDAEDAY----YEVHGRRLERGGGVLRVEWAKQPPPSGPGSK 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,593
Number of Sequences: 5004
Number of extensions: 51273
Number of successful extensions: 248
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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