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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C05f
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    82   3e-17
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    42   5e-05
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    28   0.62 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   0.62 
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   2.5  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   3.3  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   4.4  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    25   5.8  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   5.8  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   5.8  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    24   7.7  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 82.2 bits (194), Expect = 3e-17
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = -1

Query: 193 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 53
           K+F  K+KLAK  +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 5   KSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 17/33 (51%), Positives = 26/33 (78%)
 Frame = +1

Query: 301 VLDLDLFRADKDGNPDKIRENQKKRFKDVALXD 399
           +LD++LF+ +K GNP+ IRE+Q+KR  DV + D
Sbjct: 1   MLDINLFQVEKGGNPEIIRESQRKRGADVGVVD 33


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 41  FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 133
           ++S+ L    +P TP S  +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 71   SPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLPVP 202
            +P TP++V S++V+ AH Y    GS +     Q A  N+ +P+P
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHGGSQIVPPPKQPA--NRVVPLP 1023


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -3

Query: 356 RILSGLPSLSARNKSKS 306
           R L GLPSLS RN  KS
Sbjct: 130 RSLHGLPSLSRRNSKKS 146


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -1

Query: 247 LKLSNTSSLVSLVPIRHGKTFIIKRKLAKKLKQNRPIPQWVRM 119
           +K  N + L  LV IRHG  F    +    ++    + +W  +
Sbjct: 277 IKTLNVTRLPHLVAIRHGVAFSYSERSVSAMRNTFQLIKWASL 319


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 83  PLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLPVPNRH 211
           P +  SN VS ++   L   S L    GQF  NN       RH
Sbjct: 63  PPNSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTSSQRH 105


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 56  LELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLP 196
           +++  +  TP  +I+  +   H   L   S L + +GQ A NNK  P
Sbjct: 344 VDISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNKLKP 390


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 260 VEIFFKIIKHVVSRLPRADSAREDV 186
           + + +K+IKH++   P A S R+ V
Sbjct: 213 INLEYKVIKHLLEHYPLALSVRQQV 237


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 247 LKLSNTSSLVSLVPIRHGKTFIIKRKLAKKLKQNR 143
           L LS  S L  +V ++     ++KRK AKKL + +
Sbjct: 202 LMLSGVSLLAGVVFLKETYAPVLKRKQAKKLLEKQ 236


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -1

Query: 157 LKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTK 62
           +K+ +P+P+W  ++ G     +     W R K
Sbjct: 23  VKELKPLPEWKSLKFGENFTDHMLIMKWNREK 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,480
Number of Sequences: 5004
Number of extensions: 30195
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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