SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A03f
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    95   2e-21
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    31   0.054
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    29   0.13 
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    28   0.38 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    28   0.38 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   0.51 
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   0.67 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   0.67 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   1.5  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   1.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   1.5  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   1.5  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    25   2.0  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    25   2.0  
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    25   2.0  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    25   2.7  
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    25   3.6  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   4.7  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    24   4.7  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    24   4.7  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    24   6.3  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    24   6.3  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    24   6.3  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    24   6.3  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    24   6.3  
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe...    23   8.3  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    23   8.3  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    23   8.3  
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    23   8.3  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    23   8.3  

>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 95.5 bits (227), Expect = 2e-21
 Identities = 43/80 (53%), Positives = 58/80 (72%)
 Frame = +2

Query: 53  DGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVN 232
           +G + + +E+L    DE+ SRTRLL+N+IK+MKSE  R++HE     +KIKEN EKI  N
Sbjct: 22  EGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNN 81

Query: 233 KTLPYLVSNVIELLDVDPQE 292
           K LPYLV NV+E+LD+ P E
Sbjct: 82  KMLPYLVGNVVEILDMQPDE 101


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 30.7 bits (66), Expect = 0.054
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = +2

Query: 65  ALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLP 244
           ALS+  + +PT+      +LL    ++M ++ +++        D + E  +K +++  LP
Sbjct: 406 ALSQIAVEIPTEVSKHHAQLLPLVFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLP 465

Query: 245 YLVSNVIELLD 277
            L+  ++ LL+
Sbjct: 466 MLMERLVGLLE 476


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = +2

Query: 32   EDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKEN 211
            +DK+  E   E +S     + + E +++ +   NE+K+ K +   +  ++   N   KE+
Sbjct: 824  QDKNQIETLNERISAAADELSSMESINKNQA--NELKLAKQKCSNLQEKINFGNKLAKEH 881

Query: 212  TEKI 223
            TEKI
Sbjct: 882  TEKI 885


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 44  IWEDGEEALSEEVLRMPTDEIVSRTRLLDN 133
           ++ DGE+ L  E+ ++PT+ I S T   DN
Sbjct: 324 LFVDGEKGLRSELSQIPTENIDSTTDRFDN 353


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +2

Query: 122  LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 301
            L+D   +IM++E  R  + ++   + I  + +    N +LP+     I+L+D +     E
Sbjct: 1114 LIDGHSEIMENERRRPKYRIRLSGNPILGDGKSDNQNMSLPFYRGEYIQLIDANQDNYLE 1173

Query: 302  D 304
            +
Sbjct: 1174 E 1174


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +2

Query: 35  DKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENT 214
           DKS  ++ E+ L   + R+ ++  V  +R+  +  K   SE+      LQ QN+  K++ 
Sbjct: 139 DKSFRKNMEDEL--RITRLASENNVLISRI--DRTKRHFSELFTQKQMLQLQNENFKDDY 194

Query: 215 EKIK-VNKTL 241
           EKIK  NK L
Sbjct: 195 EKIKEENKRL 204


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 128 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELL---DVDPQEEE 298
           DN++  +++ +M  + +    N+K+ E    +  +KTL ++ S ++  L   DV    EE
Sbjct: 700 DNDMASLEAPMMSHNTDTDTLNNKLNEKDNVVFEDKTLQHVASEIVPNLPPADVGELNEE 759


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 140  KIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVI 265
            +++ +E+ R+S  L  Q  ++  +TEK ++N     L SNV+
Sbjct: 1128 EMLNAELQRVSQSLPPQMSRVVHDTEK-RLNMLFDRLNSNVL 1168


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/61 (18%), Positives = 29/61 (47%)
 Frame = +2

Query: 122  LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 301
            L+D    IM++   R  + ++   + I  + +    N ++PY+    ++++D +     E
Sbjct: 932  LIDGHCPIMENGKRRPKYRIRLSGNPILGDGKSDNQNMSIPYIRGEYVQMIDANQDNYLE 991

Query: 302  D 304
            +
Sbjct: 992  E 992


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 128 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEED 304
           DNE K MK E   +  + Q +  ++ + ++K+K  K           ++ +   EEEED
Sbjct: 89  DNEAKKMKREKEILRQQRQKRKSELTQLSQKVK-EKFKKMRKKPARRIVTIANDEEEED 146


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 92  PTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKE 208
           P+ EI S+    DNE  ++  + + IS+E   +ND  +E
Sbjct: 61  PSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTTEE 99


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +2

Query: 14  TMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMR---ISHELQ 184
           T+   L+D +IW D     S    R+    +  R + ++     +++ +     I + +Q
Sbjct: 300 TVGLMLQDNAIWSDYPRVWSAFCGRLNDKSVACRIKCIEVASNALQNSLATSEIIENVVQ 359

Query: 185 AQNDKIKENTEKIKV 229
               K+ +  EK++V
Sbjct: 360 MLQSKLADTDEKVRV 374


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -2

Query: 151 LHYFDFIVQKSGSTYDFISWHAK---NFLTESFLAILPN*LV 35
           L + D  ++K G+T  FI WH     N    S  +I+ N ++
Sbjct: 39  LRHVDIEMKKQGNTIKFIVWHGSRKHNACIRSVYSIINNMII 80


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 53  DGEEALSEEVLRMPTDEI--VSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIK 226
           D +  L   +L+  +DE+  ++ T L+DN ++   ++   +S +   +   I    E++ 
Sbjct: 307 DSKGNLDVSLLKSLSDEVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMA 366

Query: 227 VNKTLPYL 250
            ++  PY+
Sbjct: 367 YDEENPYV 374


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 47  WEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQN 193
           W++G +  +E++     D +V     + +  + +KSEV ++  E+  QN
Sbjct: 141 WKNGLDKNNEKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQN 189


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 29  LEDKSIWEDG---EEALSEEVLRMPTDEIVSRTRLLDNEIKI 145
           + DK  WE+    +E     + R+PTD+     +++ N +K+
Sbjct: 462 VHDKKSWEEMNAIQEYFQRPITRVPTDDYEELEKVVKNALKM 503


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 215 EKIKVNKTLPYLVSNVIELLDVDPQEEEED 304
           +++ +  TLPY    V E+L +  QEE+ D
Sbjct: 346 DRMLIISTLPYSHEEVKEILKIRCQEEDVD 375


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 38  KSIWEDGEEALSEEVLRMPTDEIVSRT 118
           K+I  D E  L+EEVL   TD+ V+ T
Sbjct: 285 KNILNDDELHLTEEVLSFLTDDPVTLT 311


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 164 RISHELQAQNDKIK-ENTEKIKVNKTLPYLVSNVIELLD--VDPQEEEEDGA 310
           R+S E  A ++  + E+    + N+TL  L  N++E+ D   DP ++  D +
Sbjct: 579 RVSDEHSASSNFNEIESQASFEQNQTLDILSENIVEIQDKSTDPLQKSLDSS 630


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +2

Query: 131 NEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSN 259
           N+ ++  + V   +  +      I +NTE  ++NK++ Y + N
Sbjct: 185 NQDQVDNTHVQNSTDGVNQDTGMILDNTEDKEINKSMSYSMKN 227


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 65  ALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKI 223
           ++  E  R PTD +  RTRL   + +     V  ++H ++ +       T+K+
Sbjct: 571 SIKYEYTRTPTDFLARRTRLAFLDARQALQAVAGVTHVMKEEFGWDDATTDKL 623


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +2

Query: 29  LEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKE 208
           LEDK   E   + L + +  + ++   +  + +  E K+  S      +E+Q QN  +K 
Sbjct: 272 LEDKFNSEAARQLLQKSLSIVASNLKQAENKTISYEEKL--SIAQNSINEIQTQNRDLKL 329

Query: 209 NTEKIK 226
            TEK++
Sbjct: 330 ETEKLQ 335


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 29  LEDKSIWEDGEEALSEEVLR 88
           +ED++I +DGE A++E+  R
Sbjct: 152 IEDENIIDDGETAINEQKKR 171


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 15/79 (18%), Positives = 31/79 (39%)
 Frame = +2

Query: 2   NHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHEL 181
           +H++      +DK +  DG     +E     +    S+ R++ N+      +V+      
Sbjct: 71  SHSLPSIVHEDDKLVGSDGVSTTPDEYFEQQSTRSRSKPRIISNKETTTSKDVVHPVKTE 130

Query: 182 QAQNDKIKENTEKIKVNKT 238
              ND    +  K  V++T
Sbjct: 131 NFANDLDTTSDSKPVVHQT 149


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 22/78 (28%), Positives = 32/78 (41%)
 Frame = +2

Query: 26  TLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIK 205
           T E     E    +L EEV R PTD+   +    D +  + K+E + I      Q ++IK
Sbjct: 702 TAEKPFTTEKPLSSLPEEVSRQPTDDKGEQVSNADVDSGLSKTERLTIQ-----QTNEIK 756

Query: 206 ENTEKIKVNKTLPYLVSN 259
                   +  LP   SN
Sbjct: 757 HVPTNTTSSVKLPQQPSN 774


>SPAC869.06c |||cation binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 25/94 (26%), Positives = 43/94 (45%)
 Frame = +2

Query: 20  ATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDK 199
           AT  +++ +WE    ++ EE++  P  E     + L  E K M +E  R  H+L  +   
Sbjct: 53  ATRWQNQFVWELARHSVGEEIVVYPKFE-----KYLGEEGKEM-AEKDRHEHQL-VKEML 105

Query: 200 IKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 301
            K  + K   +  +P L   ++E L     EEE+
Sbjct: 106 YKFQSMKANQSNFIPAL-DELMESLQKHIDEEEQ 138


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +2

Query: 98  DEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPY 247
           D+  S  R  D  + ++ ++   +SHE ++ + +  ++ + +K N T PY
Sbjct: 305 DDSTSIIRGFDPRLPVLSTK--NVSHEEKSHSVQDDKSKQLLKPNPTQPY 352


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
 Frame = +2

Query: 113 RTRLLDNEIKIMK--SEVMRISHELQAQ----NDKIKENTEKIKVNKTLPYLVSNVIELL 274
           +T++  N + + +  SE +R  +EL+ +      +I E ++++ +NK +  + S  I++L
Sbjct: 390 KTKVSRNVVSVDRHVSEYVRTIYELRQKVSILQKRIAEESKQLALNKEVRKISSREIKML 449

Query: 275 D 277
           D
Sbjct: 450 D 450


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 151 LHYFDFIVQKSGSTYDFISWH 89
           L   D  ++K G+T  FI WH
Sbjct: 39  LRRVDIELKKQGNTIKFIVWH 59


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 158 VMRISHELQAQNDKIKENTEKIKVN-KTLPYLVSNVIELLDVDPQEEEE 301
           V  ++ +L      +KEN+EK K N ++L   V N+ + +     E +E
Sbjct: 346 VEELTKQLHVAESTLKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDE 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,758
Number of Sequences: 5004
Number of extensions: 16285
Number of successful extensions: 98
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -