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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0023.Seq
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    72   3e-14
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    72   3e-14
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   0.56 
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    25   3.0  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    25   3.0  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   3.9  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    24   6.9  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    24   6.9  
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    24   9.1  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    24   9.1  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 72.1 bits (169), Expect = 3e-14
 Identities = 35/96 (36%), Positives = 60/96 (62%)
 Frame = -3

Query: 377 VXCIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKD 198
           V  IGFT + +   +KT Y  +   ++ +++       +  +  +RE+V KLIP+ I ++
Sbjct: 137 VFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGRE 196

Query: 197 IEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 90
           IE+A   I+PL++V +RKVK+LK P+ +  KL+ELH
Sbjct: 197 IERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELH 232


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 71.7 bits (168), Expect = 3e-14
 Identities = 35/96 (36%), Positives = 59/96 (61%)
 Frame = -3

Query: 377 VXCIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKD 198
           +  IGFT++     +KT Y  +   ++  ++       + +   ++E+V KLIP+ I + 
Sbjct: 137 IFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRA 196

Query: 197 IEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 90
           IEKA + IYPL++V +RKVK+LK P+ +  KL+ELH
Sbjct: 197 IEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELH 232


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.9 bits (59), Expect = 0.56
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 98  PSTSRSRNGASSTLSPFGCKHRAE 169
           PSTSR RN   S LS    KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 165 ARCLHPKGESVEEAPFRDLEVD 100
           +RCL    ++V+EA  RDLE++
Sbjct: 22  SRCLGFAAQNVDEANLRDLEIE 43


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -3

Query: 245 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 147
           +R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 398 VRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 QSCDVACNDFTHFLSDCSDLSVLGRSTSCVGSRSPY 355
           +S  V+ +D T+  +  SD+   G ST+C    SP+
Sbjct: 375 ESSAVSLSDTTNLNTPISDIPSPGSSTTCSNLSSPH 410


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 362 FTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVV-NKLIPDSIAKDIEKA 186
           F+ ++S+   + C+      Q +   +  +H T  H S L ++V N ++ ++    ++  
Sbjct: 32  FSKRNSILNNQVCFEAIKYIQRHYFSSQSHHVTYLHQSPLEKLVSNGVVNENGDLTMDSL 91

Query: 185 CHGIYPL 165
            H IY L
Sbjct: 92  SHQIYLL 98


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 269 YTRRHNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 147
           Y  R  S L++ VN+L P  +   I    HG  P  D  IR
Sbjct: 269 YFNRSYSLLKDEVNRLNPSPLENQIVGRAHGKTP-HDQSIR 308


>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = -2

Query: 339 PTQDVLRPSTLRSEQSERKCVKSLHATSQ 253
           P+QD+ + S L   +++ + ++S+H+ S+
Sbjct: 78  PSQDMFQTSDLFERRNDEQVLRSIHSFSR 106


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 101 STSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 241
           S + S N +S  L       R EG     PSR   QWS +S+    P
Sbjct: 330 SAATSGNISSPALFDSELGARPEGSVAIEPSRVLLQWSSQSSSHTIP 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,320
Number of Sequences: 5004
Number of extensions: 25298
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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