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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30023
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    28   0.99 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   1.3  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   5.3  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    25   5.3  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   9.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.2  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   9.2  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    25   9.2  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   9.2  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   9.2  

>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 312 PFVPRAVEPKYLSRTSLRDENGKPKIADEELQAVT 416
           PF+PR  +P+ + +TS  +EN      D++ + V+
Sbjct: 664 PFIPRRNQPRDMFKTSAEEENEDEDEDDDKFRRVS 698


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +3

Query: 249 ITFNFAVREWVNEYFGT--NIEMPFVPRAVEPKYLSRTSLRDENGKPKIADEELQAVTNC 422
           ++ +F    WVN         E+ +    + P   S  S    +GKP +AD  +++   C
Sbjct: 116 VSVSFDCLNWVNSMIPNLPEKELQYWILELLPLQSSFLSYALRDGKPSVADSAIKSTRRC 175

Query: 423 TLTNALKQLASLVLLAEDIFSE 488
             +   K++ SL  L   + +E
Sbjct: 176 YRSLFCKKMDSLKKLVSFLLTE 197


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 421 QLVTACNSSSAIFGF 377
           Q + ACNSSSAI+ F
Sbjct: 710 QQILACNSSSAIYSF 724


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 229 CVEWMWELHLISQCGNG*MNISELISRCLSCHVRSNLSI 345
           C+EW    HL +  G     I  L+ +C+ CH  S +SI
Sbjct: 162 CLEWK-NPHL-TNVGTLKAPILRLVIKCVRCHYGSEISI 198


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 225 SQKTSGNRHFELTDILTGELSLKPLFLIRHAVQ 127
           S   S +RH +L D L GE++L       H VQ
Sbjct: 429 SVSESKDRHAKLLDALAGEIALLQELSHEHIVQ 461


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 312  PFVPRAVEPKYLSRTSLRDENGKPKIADEELQAV 413
            P  P++V PK  +RT   DEN      ++E  +V
Sbjct: 1069 PLAPKSVSPKQAARTLDIDENYDDDEGEKETVSV 1102


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = -2

Query: 463 STSEASCLSAFVKV----QLVTACNSSSAIFGFPFSSRKLVRDKYLGSTARG 320
           + ++A CL  F  +     ++ A  SS A++G    ++KL +DK +  T  G
Sbjct: 620 AVTDAQCLEGFRALCHLEGIIPALESSHAVYGGMELAKKLPKDKDIVITISG 671


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 198 FELTDILTGELSLKPLFLIRHAVQVTY*LMRKYFNSDNKF-RKVSKKLLVYEIPPLS*QH 22
           ++  +I+  +L    LFL+   + V +   R     D+ +   VSK+    + PPL   H
Sbjct: 16  YKFNNIVKFDLYNVLLFLL-FLLPVLFVFARSMIEFDDTYPESVSKRARPSQKPPLRSTH 74

Query: 21  APHSLL 4
            PH L+
Sbjct: 75  LPHLLI 80


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 86  ISSEKFQRNFLFTKSRHYH 30
           ISSEK  R+FL   S HY+
Sbjct: 678 ISSEKIYRSFLSRISEHYN 696


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 240 DVGITFNFAVREWVNEYFGTNIE 308
           ++G+ +N  +R W+  Y G N E
Sbjct: 33  ELGVKWNSDIRSWMTSYVGFNGE 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,701
Number of Sequences: 5004
Number of extensions: 42369
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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