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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00029
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   102   4e-23
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   101   1e-22
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    30   0.36 
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    27   3.4  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   3.4  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   4.5  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   4.5  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   5.9  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   7.8  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   7.8  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   7.8  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  102 bits (245), Expect = 4e-23
 Identities = 45/88 (51%), Positives = 68/88 (77%)
 Frame = +2

Query: 239 FPQIQIIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 418
           F ++++  E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ RVF I
Sbjct: 81  FRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVI 140

Query: 419 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 502
           GFT + +   +KT YAQ +Q+RAIR+KM
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQKM 168



 Score = 88.6 bits (210), Expect = 7e-19
 Identities = 41/68 (60%), Positives = 51/68 (75%)
 Frame = +3

Query: 51  IVDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 230
           +VDPF+RK+WYD+KAP+ F    VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 231 ERSFRKFR 254
           E +FRK +
Sbjct: 78  EHAFRKVK 85



 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 23/51 (45%), Positives = 37/51 (72%)
 Frame = +1

Query: 508 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 660
           +I    ++  +RE+V KLIP+ I ++IE+A   I+PL++V +RKVK+LK P
Sbjct: 171 VIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAP 221


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  101 bits (242), Expect = 1e-22
 Identities = 44/88 (50%), Positives = 67/88 (76%)
 Frame = +2

Query: 239 FPQIQIIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 418
           F ++++  E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ R+F I
Sbjct: 81  FRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVI 140

Query: 419 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 502
           GFT++     +KT YAQ +Q+RAI +KM
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQKM 168



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 43/68 (63%), Positives = 51/68 (75%)
 Frame = +3

Query: 51  IVDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 230
           +VDPF+RKDWYD+KAP+ F    VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 231 ERSFRKFR 254
           E SFRK +
Sbjct: 78  EHSFRKVK 85



 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 24/51 (47%), Positives = 35/51 (68%)
 Frame = +1

Query: 508 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 660
           +I        ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P
Sbjct: 171 VIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAP 221


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 412  LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV*IITRDVTNSELREVVNKL 561
            LHW+    L+  +Q +  P H+GQ  S  + NV  +   V   E   +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 257 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 388
           +A   Q R V C  H MDL  + LR +V  ++   L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 352 LPFFNHPPELIGCEVHAVEVAEHITS 275
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 239 FPQIQIIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 349
           F   QI++  V G  VL + H  +L    ++W +  W
Sbjct: 59  FVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANW 95


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 239 FPQIQIIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 349
           F   QI++  V G  VL + H  +L    ++W +  W
Sbjct: 59  FVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANW 95


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 520 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 636
           D     +R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 392 DALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 329 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 466
           ++    W  L+       T  GYV+R    GFT+  ++ + K  +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -2

Query: 295  VAEHITSL-HIFGDYLNLRKDLSASVSA---CRSARETSKTLPFNPSEAIFVPWVRLTSV 128
            + +H+ S  H+   Y  L + LS+S      CR   E S+ +   P E IF    +L+  
Sbjct: 870  IRQHLDSYNHMVELYNTLLQRLSSSDQVDLQCRYLHELSEFIKKIPKEFIFHTICKLSKG 929

Query: 127  VPTCXLLN 104
            +  C L+N
Sbjct: 930  LIPCFLMN 937


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 308 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 406
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,535
Number of Sequences: 5004
Number of extensions: 60610
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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