SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D18
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   239   2e-64
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   234   9e-63
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    44   3e-05
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   0.76 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   0.76 
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    27   3.1  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.4  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   7.1  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.4  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    25   9.4  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  239 bits (586), Expect = 2e-64
 Identities = 116/163 (71%), Positives = 129/163 (79%)
 Frame = +1

Query: 151 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 330
           +G K L   ME YV+KRR+DG H+INL +TWEKLVLAAR +  IENPADV VISSRP+G 
Sbjct: 28  IGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGH 87

Query: 331 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 510
           RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D Q I EAS+VNIPV
Sbjct: 88  RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPV 147

Query: 511 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 639
           IALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRG 190



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 96  VLALNEEDVTKMLAATTHLGAENV 167
           VL   ++D+  +LAA +H+G++N+
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNL 33


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  234 bits (572), Expect = 9e-63
 Identities = 111/166 (66%), Positives = 130/166 (78%)
 Frame = +1

Query: 151 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 330
           +G K L   M+ YV+KRR+DG H++NL +TWEKLVLAAR +  IENPADV V+S+R +G 
Sbjct: 27  IGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGH 86

Query: 331 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 510
           RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D Q I EAS+VNIPV
Sbjct: 87  RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPV 146

Query: 511 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGCAS 648
           IALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG  S
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLS 192



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 84  GGLDVLALNEEDVTKMLAATTHLGAENV 167
           G  ++L   +ED+ ++LAA  H+G++N+
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNL 32


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 25/171 (14%)
 Frame = +1

Query: 181 ETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQR-AVLKFAAH 357
           + ++Y +R +G H+I+L +T   L  A   V +I     + +      GQ+ +V+  A  
Sbjct: 72  QPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGIILFIGTRNGQKDSVVAAAKR 130

Query: 358 TGATPIAGRFTPGAFTN--QIQA----------------------AFREPRLLIVLDPAQ 465
                I  R+ PG  TN  ++Q                       ++  P L+++L+P +
Sbjct: 131 ARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQTDKKPSYVFPDLMVILNPLE 190

Query: 466 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 618
           +     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 191 NKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 220 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 396
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = +1

Query: 355 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 519
           +  A P  G       T+ I A F+  +P + ++     D   +   T A    +  + L
Sbjct: 29  YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87

Query: 520 CNTDSPLRFVDIAIPCNTKSSHSI 591
           C+ +S  RF D+A+  NTK +H I
Sbjct: 88  CDRNSK-RFADLAVAANTKFTHFI 110


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -2

Query: 483 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP**DD 304
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP   D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225

Query: 303 EHISGVLDG 277
            H SGV  G
Sbjct: 226 LH-SGVFGG 233


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +1

Query: 94  TCSPSTRKMSPKCLLQPPILGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAV 273
           TC     ++S   +   P+LG   + S + T++   RA+G   + +  T     + A  V
Sbjct: 443 TCVMLFSRVSTIAVTVSPVLG---IISSIITWLVVARAEGGKTLTIETTGANNPMLAGNV 499

Query: 274 VAIENPADVFVISSRPFGQR 333
           V + +PA   +I S  F ++
Sbjct: 500 VGLLSPALYILILSIIFPEK 519


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -1

Query: 304 RTHQRGSRWLRQHEQPEQVFPRYDA 230
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 188  MSTNDVLMVPM*STCVVPGKNLFWLLVL 271
            M+ N V  + +  T   PG N FW L++
Sbjct: 920  MTLNPVFQIGLNGTTHSPGNNSFWPLII 947


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 147 HLGAENVNFQXGDLCLQTTC*WYP--CDQL 230
           H G EN+ +Q GDL +     W    CD+L
Sbjct: 308 HEGPENMEWQKGDLVIHFAGCWVENRCDEL 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,315
Number of Sequences: 5004
Number of extensions: 63064
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -