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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D03
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    44   9e-06
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    36   0.002
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    32   0.022
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   1.9  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    25   3.4  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   3.4  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   4.4  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    24   7.8  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    24   7.8  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    24   7.8  

>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 43.6 bits (98), Expect = 9e-06
 Identities = 26/91 (28%), Positives = 46/91 (50%)
 Frame = +1

Query: 19  VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFK 198
           V+ PN    L R    Q P    F   + + K+D+++YL+ +Y + VV V+++I  GK  
Sbjct: 10  VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLF 68

Query: 199 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPD 291
           ++ + G V +    K   V + +   F YP+
Sbjct: 69  RNQL-GQVKRPQSEKRVIVEMEE--PFVYPN 96


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 76  NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 213
           N + FH  ++  K+ IKN ++K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVK 124


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 32.3 bits (70), Expect = 0.022
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 76  NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 213
           N + FH  ++  K+ IK  + K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVK 124


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = +1

Query: 97  SMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIK-------EDDVKVAFV 255
           S+E    ++K    +  ++    + T +N  + KK+  K +++K       EDD+     
Sbjct: 297 SVEDDSLELKEITPEALDIGQTSLFTTLNQTQVKKEDNKKFLLKEINAKLNEDDIDSELE 356

Query: 256 TLPKTMTFKYPDLFEKSINEEEEH 327
              K  T    ++ +  ++EE EH
Sbjct: 357 IEVKPKTTALDNIEKSKLSEENEH 380


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  RPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPV 159
           RP  ++LP    ++ SM  T + +     +I++VPV
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPV 142


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 28  PNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEV 153
           P+  + LV  +P+ +PN+      +++ +YDI   L   Y +
Sbjct: 605 PSSKVNLVDTYPQTIPNVSKPSTPIDVPEYDISACLPGFYRL 646


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 160 VDVRTKINMGKFKKDVVKGYVIKEDDVKVA 249
           V+ R ++N+G     V K Y IKED  K A
Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPA 292


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 118 DIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDD 237
           D+KN +E    +  +DVR  +  G  +  + K   + E D
Sbjct: 306 DLKNLIETSPHITFLDVREPVQFGICRLPLFKNIPLSEVD 345


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 100 MEMTKYDI-KNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVIKED 234
           M + +Y+  K+Y EK YE  +  +R ++     + D+++  ++KE+
Sbjct: 362 MAVKEYESEKSYSEKEYEEKISSLRIELEDKLAEIDMLRNKLLKEE 407


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/19 (52%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = +1

Query: 208 VKGYVI-KEDDVKVAFVTL 261
           V G+++ KEDDV+++F TL
Sbjct: 455 VSGWMLSKEDDVRLSFATL 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,228,036
Number of Sequences: 5004
Number of extensions: 20442
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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