Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a09r
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 39 6e-04
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 33 0.040
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 30 0.37
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 29 0.86
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 4.6
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 6.1
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 26 6.1
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 26 6.1
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 26 6.1
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 8.0
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 39.1 bits (87), Expect = 6e-04
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -1
Query: 677 YMHTLIVGLACIPTSLWLPLCVH-KLGAKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSC 501
Y ++LIV +P SL + V ++G K L SL GV + S L +C
Sbjct: 409 YRNSLIVSAIGVPGSLIAGVLVEFRIGRKGTLCLSLILTGVFLFASTTAKTSNAYLGWNC 468
Query: 500 IFEALTSLAISLVFCVLVDLFPTNLRVMAAALSLTAGR 387
F + + +++ ++FP+ +R A L+ +A R
Sbjct: 469 TFSFFSDIMYGVLYAYTPEVFPSKVRGTAVGLAASANR 506
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 33.1 bits (72), Expect = 0.040
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Frame = -1
Query: 674 MHTLIVGLACIPTSLWLPLCVHKLGAKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSCIF 495
M + G A P LW P+ +G K LI + + ++ + V +Q +++ F
Sbjct: 139 MSLYVCGFASGPI-LWAPIS-ELVGRKIPLIVGMFMFSIFSIAVA-VAKDVQTVMICRFF 195
Query: 494 EAL-TSLAISLVFCVLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSFGYL 348
S +S+V D+F R A + G LIG ++ G+L
Sbjct: 196 SGFCASSPLSVVAAAFADMFDNKTRGPAVCIFACITFAGPLIGPIAGGFL 245
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 29.9 bits (64), Expect = 0.37
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = -1
Query: 698 KVIDQSVYMHTLIVGLA--CIPTSLW-LPLCVHKLGAKFFLIFSLSFAGVVTVGLYYVQN 528
K+ Q+ LIVG A C+ S+ L L + +LG+KF+L FS V+ L+ VQ
Sbjct: 195 KIASQASKTELLIVGTAYACMLISIVSLYLKMRRLGSKFWLFFS-----VLLSTLFSVQF 249
Query: 527 SIQNLVLSCIFEALTSLAISLVFCVLV 447
++ + S + +L SL SL F + V
Sbjct: 250 AMTLVRASGVRISLVSLIESLPFLINV 276
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 0.86
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = -1
Query: 629 WLPLCVHKLGAKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSCIFEALTSLAISLVFC-- 456
W CV + FL+F + + ++ + Y +QN+ + +E+ L IS C
Sbjct: 432 WTGNCVGARNHRTFLLFVFTLSTLIPIYFYVAFYYLQNIPIQKKYESYRCLFISGTICQW 491
Query: 455 VLVDLFPTNLRVMAAALSL 399
L D+F V+ A+L+L
Sbjct: 492 SLKDMF-----VLVASLTL 505
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 4.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 444 PVPYKSQGNGCRVIADCWSRWRSD 373
P PY + N C+++ D + W+ D
Sbjct: 451 PTPYPALINPCKILPDYFPSWKPD 474
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 100 TSAYEMKELNSDTINNTCLHYLH 168
T EM ++N D I C HY H
Sbjct: 397 TICMEMFKINDDVIQLPCKHYFH 419
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.8 bits (54), Expect = 6.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -3
Query: 420 NGCRVIADCWSRW 382
N C V+ CW++W
Sbjct: 102 NACTVVVGCWNKW 114
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 681 RLHAHPDCRSRLHSHLALATPLR 613
RL + PDC +R H++ A PLR
Sbjct: 167 RLLSSPDCDARQHANSDTAIPLR 189
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 12 TQVNTKILLCSFFLKFNKKHRILYHTVN 95
T++N +L ++H++LYHTV+
Sbjct: 341 TELNVDLLSLPSVKSLREEHKVLYHTVS 368
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 291 CYTLLLLAKDGTGSLGLNIIYIVQLEFVNRSYNEW 187
C LLL+ G GSL ++ LE ++R+YN +
Sbjct: 1641 CVKELLLSYLGEGSLAAMFYSLLLLEGLSRTYNSF 1675
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,226
Number of Sequences: 5004
Number of extensions: 56449
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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